MicroB3-IS/osd-analysis

Issues

• OSD 2015 Environmental Data?

  #39 opened 5 years ago by davislaundon
  1

• COORDINATES OSD2015

  #36 opened 6 years ago by maripa
  3

• Raw fastq files for the Life Watch data set of 2014 (V4-V9) ?

  #38 opened 5 years ago by vaulot
  2

• Sequencing depth of OSD metagenomes

  #37 opened 6 years ago by KijanaDaudi
  0

• Non active links to assembled contigs etc.

  #35 opened 6 years ago by mkarlik93
  1

• Where are the data now?

  #34 opened 6 years ago by mkarlik93
  2

• Links on OSD wiki are dead....

  #33 opened 7 years ago by vaulot
  2

• Migrate pre-processing scripts to git:

  #32 opened 7 years ago by renzok
  0

• add mg-traits pfam table to owncloud

  #12 opened 7 years ago by renzok
  0

• Comparison of the different assemblers

  #31 opened 9 years ago by chochart
  2

• Calculation of the number of organisms

  #30 opened 9 years ago by BouchraChaouni
  0

• Wrong cluster reference sequence in otu file

  #27 opened 9 years ago by ikostadi
  3

• normalized 16S/18S?

  #29 opened 9 years ago by noaagoodwink
  1

• phylogenetic tree

  #28 opened 9 years ago by BouchraChaouni
  0

• Biological File Identifiers in Environmental Metadata

  #26 opened 9 years ago by yavorska
  3

• Bulk download of EBI-metagenomics processed files

  #15 opened 9 years ago by rec3141
  11

• report the tool versions used for assembly

  #25 opened 9 years ago by renzok
  0

• OTU table 18S

  #22 opened 9 years ago by ramonmassana
  5

• create tables with otu taxa mapping for LGC 16S/18S datasets

  #5 opened 9 years ago by renzok
  1

• Update R script for contextual data import and cross-check with MC's data

  #23 opened 9 years ago by pbuttigieg
  5

• Fix ENVO IDs in contextual data file

  #24 opened 9 years ago by pbuttigieg
  4

• make mg assemblies available

  #7 opened 9 years ago by renzok
  1

• make ancillary data form available

  #4 opened 9 years ago by renzok
  3

• make SILVAngs analysis results for LifeWatch Italy samples available

  #8 opened 9 years ago by renzok
  6

• Archaeal data?

  #1 opened 10 years ago by pbuttigieg
  2

• Provide 93% quality-filetered taoxnomy for MED exports

  #20 opened 9 years ago by ikostadi
  2

• submit australia data to ENA

  #11 opened 9 years ago by renzok
  1

• submit lifewatch data to ENA

  #10 opened 9 years ago by renzok
  3

• make SILVAngs analysis results for Australian samples available

  #9 opened 9 years ago by renzok
  3

• SILVAngs report PDF for 16S/18S LGC has inconsistencies

  #21 opened 9 years ago by ikostadi
  1

• Questions about metagnomic data at EMG compared to documentation

  #18 opened 9 years ago by renzok
  19

• make metagnomes workable dataset available

  #19 opened 9 years ago by renzok
  0

• fix truncated osd2014_18s---ssu---otu_mapping.stats and osd2014_16s---ssu---otu_mapping.stats

  #16 opened 9 years ago by renzok
  1

• elaborate on data delivery section of pre-processing documentation

  #17 opened 9 years ago by renzok
  0

• publish documentation on sequence data pre-processing

  #13 opened 9 years ago by renzok
  1

• why OTU number in 18S data is very different between file osd2014_18s---ssu---otus and osd2014_18s_lgc_otu_by_sample

  #14 opened 9 years ago by svicario
  5

• Make silva-ngs analysis results for LGC data available

  #3 opened 10 years ago by renzok
  2

• re-run mg-traits against newers silva db 119.1

  #6 opened 10 years ago by renzok
  0