Pinned Repositories
assembly_stats
Calculates both scaffold and contig statistics (N50, L50, etc.) from a scaffold FASTA file.
bhl_flickr_search
An app to search images from the Biodiversity Heritage Library Flickr account
covid-streamlit
A COVID risk assessment model app built using Streamlit
CSVConf2021_siopenaccess
Slides for CSV Conf 2021 Presentation
custom_blast_db
Utilities for making a versioned custom blast database
fantasy_sport_data
A place to put Jupyter notebooks showing my fantasy baseball/football draft prep.
genetic_collections
A Python library for connecting and comparing genetic records with specimen data.
siopenaccess
Example notebook showing how to interact with SI Open Access on AWS
MikeTrizna's Repositories
MikeTrizna/fantasy_sport_data
A place to put Jupyter notebooks showing my fantasy baseball/football draft prep.
MikeTrizna/diptera_emu_upload
Just documenting the process of uploading Diptera samples to EMu
MikeTrizna/2017-11-03-test_swc
A test workshop page made as part of Carpentry Instructor Training
MikeTrizna/2018-06-12-nmnh
Data Carpentry Genomics workshop at NMNH
MikeTrizna/2019-09-24-libraryofcongress
Library Carpentry workshop at the Library of Congress, September 2019
MikeTrizna/abifpy
Module for reading ABI Sanger sequencing trace files
MikeTrizna/align
sequence alignment. global, local, glocal.
MikeTrizna/Barcodes-to-GenBank
A collection of templates, instructions, and Python scripts for getting high quality DNA barcode records into GenBank.
MikeTrizna/binder-qiime
Testing if qiime can be installed and used in Binder
MikeTrizna/datasciencecoursera
This is a repository to accompany the Coursera Johns Hopkins Specialization in Data Science course.
MikeTrizna/diffimg
Differentiate images in python - get a ratio or percentage difference, and generate a diff image
MikeTrizna/handbook
Community Documentation for the Carpentries
MikeTrizna/idb-us-collections
MikeTrizna/jupyter_notebook_presentation
A simple repo to hold talk slides and demo notebook.
MikeTrizna/miketrizna.github.io
This is a test of using GitHub to host a static site and files
MikeTrizna/Peer-Led-Bioinformatics
Bioinformatics training series led by members of the Smithsonian community
MikeTrizna/pix_plot_gooey
A Gooey version of Pix Plot
MikeTrizna/python-pocket
A Python wrapper around the Pocket API.
MikeTrizna/QSubGen
A qsub script generation utility for use on the Smithsonian Institution High Performance Cluster.
MikeTrizna/USNMBirdDNABarcoding2017
This repository contains data and code used for a publication about a project to DNA Barcode the holdings of the USNM bird tissue collection.