MingyiXia9717

MingyiXia9717's Stars

• cbuhay/ExCID

  The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regions below an adjustable coverage threshold.

  Language:Perl145

• lgmgeo/AnnotSV

  Annotation and Ranking of Structural Variation

  Language:Tcl21534

• juliangehring/SomaticSignatures

  The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-throughput experiments.

  Language:R227

• Genentech/gReLU

  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

  Language:Python22123

• prov-gigapath/prov-gigapath

  Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data

  Language:Python40654

• pacman100/LLM-Workshop

  LLM Workshop by Sourab Mangrulkar

  Language:Jupyter Notebook339121

• TheAlgorithms/Python

  All Algorithms implemented in Python

  Language:Python194k45.6k

• donnemartin/system-design-primer

  Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.

  Language:Python274k46.1k

• soulmachine/machine-learning-cheat-sheet

  Classical equations and diagrams in machine learning

  Language:TeX7.4k1.3k

• andrewekhalel/MLQuestions

  Machine Learning and Computer Vision Engineer - Technical Interview Questions

  3k498

• Avik-Jain/100-Days-Of-ML-Code

  100 Days of ML Coding

  45.3k10.6k

• chiphuyen/machine-learning-systems-design

  A booklet on machine learning systems design with exercises. NOT the repo for the book "Designing Machine Learning Systems"

  Language:HTML9k1.4k

• khangich/machine-learning-interview

  Machine Learning Interviews from FAANG, Snapchat, LinkedIn. I have offers from Snapchat, Coupang, Stitchfix etc. Blog: mlengineer.io.

  9.7k1.6k

• jdidion/biotools

  A list of useful bioinformatics resources

  583169

• google-deepmind/alphamissense

  Language:Python50865

• ShixiangWang/sigflow

  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow

  Language:R263

• raerose01/deconstructSigs

  deconstructSigs

  Language:R13847

• AlexandrovLab/SigProfilerAssignment

  Assignment of known mutational signatures to individual samples and individual somatic mutations

  Language:Python4610

• diskin-lab-chop/AutoGVP

  Language:R183

• pnucolab/pyoncoprint

  Python OncoPrint library based on Matplotlib

  Language:Jupyter Notebook216

• vanallenlab/comut

  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots

  Language:Python8727

• parklab/MuSiCal

  A comprehensive toolkit for mutational signature analysis

  Language:Python315

• QingliGuo/FFPEsig

  Codes and Data for FFPEsig manuscript

  Language:Jupyter Notebook155

• AlexandrovLab/SigProfilerPlotting

  SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.

  Language:Python4613

• AlexandrovLab/SigProfilerExtractor

  SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

  Language:Python15351

• AlexandrovLab/SigProfilerMatrixGenerator

  SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

  Language:Python10037

• armankhondker/best-leetcode-resources

  This repository contains resources for technical coding interviews.

  3.1k323

• 1kg-ont-vienna/sv-analysis

  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel

  Language:Python23

• biopython/biopython

  Official git repository for Biopython (originally converted from CVS)

  Language:Python4.4k1.8k

• openvax/pyensembl

  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

  Language:Python37765