MiriamMarinS

Bioinformatics PhD at CSIC

CSICSpain

Pinned Repositories

CRISPRanalysis
InDels analysis of CRISPR lines by NGS amplicon sequencing technology for a multicopy gene family.
Language:Python2 1 01
MontyHall
The Monty Hall paradox.
Language:Jupyter Notebook0 1 00
NibenMetaTranscriptomics
Meta Transcriptomic study of Nicotiana benthamiana to look for high expressed locations in the genome.
Language:Jupyter Notebook0 1 00
prolaminsQuantification
Processing multiple csv output files from high-reverse phase liquid chromatography
Language:Python1 1 00
ProtEp
Processing of proteomic files for prolamin peptides analysis and CD epitopes search for each protein fraction.
Language:Python1 1 01
reciprocalBlast
Protocol to perform a reciprocal blast for comparison of two de-novo gene annotations based on different genome assemblies.
Language:Python1 1 00
SudoQ
Solving SudoQ by discard algorithm.
Language:C++0 1 00
wheatAHP
Implementation of the Analytic Hierarchy Process (AHP) to obtain the immunogenicity score of wheat lines based on their celiac disease (CD) epitopes matches on alpha- and gamma-gliadins amplicons by NGS and the score for oligopeptides based on an IFN-g ELISpot assays with fresh peripherical blood mononuclear cells (PBMCs).
Language:Python1 1 00

MiriamMarinS/prolaminsQuantification
Processing multiple csv output files from high-reverse phase liquid chromatography
Language:Python1 1 00
MiriamMarinS/ProtEp
Processing of proteomic files for prolamin peptides analysis and CD epitopes search for each protein fraction.
Language:Python1 1 01
MiriamMarinS/reciprocalBlast
Protocol to perform a reciprocal blast for comparison of two de-novo gene annotations based on different genome assemblies.
Language:Python1 1 00
MiriamMarinS/wheatAHP
Implementation of the Analytic Hierarchy Process (AHP) to obtain the immunogenicity score of wheat lines based on their celiac disease (CD) epitopes matches on alpha- and gamma-gliadins amplicons by NGS and the score for oligopeptides based on an IFN-g ELISpot assays with fresh peripherical blood mononuclear cells (PBMCs).
Language:Python1 1 00
MiriamMarinS/MontyHall
The Monty Hall paradox.
Language:Jupyter Notebook0 1 00
MiriamMarinS/NibenMetaTranscriptomics
Meta Transcriptomic study of Nicotiana benthamiana to look for high expressed locations in the genome.
Language:Jupyter Notebook0 1 00
MiriamMarinS/SudoQ
Solving SudoQ by discard algorithm.
Language:C++0 1 00
MiriamMarinS/ampAnalysis
Analysis of CRISPR-mediated edits in NGS amplicon sequences of multi-copy gene families.
Language:Python