Pinned Repositories
MFAToolkit
A toolkit for performing flux balance analysis, reaction network analysis, biochemical analysis, and biochemical property prediction
Model-SEED-core
The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.
ModelSEED
ModelSEED-UI
ModelSEED UI (beta)
ModelSeedApi
Application Programming Interface to the Model Seed
ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
ModelSEEDpy
Python package for building and analyzing models using ModelSEED
ModelSEEDpy-Escher
Escher Viewer for ModelSEED python library
PlantSEED
Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment
ProbModelSEED
ModelSEED's Repositories
ModelSEED/ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
ModelSEED/ModelSEEDpy
Python package for building and analyzing models using ModelSEED
ModelSEED/ModelSEED-UI
ModelSEED UI (beta)
ModelSEED/PlantSEED
Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment
ModelSEED/MFAToolkit
A toolkit for performing flux balance analysis, reaction network analysis, biochemical analysis, and biochemical property prediction
ModelSEED/ModelSEEDpy-Escher
Escher Viewer for ModelSEED python library
ModelSEED/KB-ModelSEEDReconstruction
ModelSEED/ProbModelSEED
ModelSEED/KB-ModelSEEDCOBRA
KBase SDK module for model analysis apps created and managed by the ModelSEED team
ModelSEED/ModelSEEDTemplates
ModelSEED/ProjectNotebooks
Repository for Jupyter notebooks and associated data for various research projects of the ModelSEED team
ModelSEED/AGORA2_models
ModelSEED/BRAVENotebooks
ModelSEED/GenomeImporter
Module for importing a genome into KBase from SEED, PATRIC, or RAST
ModelSEED/KB-CommunityModeling
ModelSEED/KB-ModelSEEDCommunity
KBase SDK module for community modeling apps created and managed by the ModelSEED team
ModelSEED/KB-ProbabilisticModeling
ModelSEED/KB-QuantitativePlantAnalysis
ModelSEED/KBaseNotebooks
ModelSEED/MAGNotebooks
ModelSEED/MicrobiomeNotebooks
ModelSEED/MINE-app
Web application for the MINE databases
ModelSEED/mine-website
ModelSEED/ModelSEED-REST
Experimental JSON REST API for ModelSEED (not supported)
ModelSEED/ModelSEED2Notebooks
ModelSEED/MSDatabaseNotebooks
Notebooks that manipulate the ModelSEED Database
ModelSEED/MSSeedSupportServer
Server to support authentication and retrieval of genomes from the SEED environment
ModelSEED/OntologyNotebooks
ModelSEED/PhenotypeNotebooks
ModelSEED/SynBioNotebooks