ModelSEED

Pinned Repositories

MFAToolkit
A toolkit for performing flux balance analysis, reaction network analysis, biochemical analysis, and biochemical property prediction
Language:C++3 12 44
Model-SEED-core
The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.
Language:Perl19 13 17110
ModelSEED
Language:Perl3 18 1192
ModelSEED-UI
ModelSEED UI (beta)
Language:HTML6 13 747
ModelSeedApi
Application Programming Interface to the Model Seed
Language:Perl4 11 01
ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
Language:HTML53 21 6038
ModelSEEDpy
Python package for building and analyzing models using ModelSEED
Language:Python17 11 916
ModelSEEDpy-Escher
Escher Viewer for ModelSEED python library
Language:Jupyter Notebook3 4 03
PlantSEED
Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment
Language:Perl6 14 197
ProbModelSEED
Language:Perl2 14 523

ModelSEED's Repositories

ModelSEED/ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
Language:HTML53 21 6038
ModelSEED/ModelSEEDpy
Python package for building and analyzing models using ModelSEED
Language:Python17 11 916
ModelSEED/ModelSEED-UI
ModelSEED UI (beta)
Language:HTML6 13 747
ModelSEED/PlantSEED
Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment
Language:Perl6 14 197
ModelSEED/MFAToolkit
A toolkit for performing flux balance analysis, reaction network analysis, biochemical analysis, and biochemical property prediction
Language:C++3 12 44
ModelSEED/ModelSEEDpy-Escher
Escher Viewer for ModelSEED python library
Language:Jupyter Notebook3 4 03
ModelSEED/KB-ModelSEEDReconstruction
Language:Jupyter Notebook2 10 01
ModelSEED/ProbModelSEED
Language:Perl2 14 523
ModelSEED/KB-ModelSEEDCOBRA
KBase SDK module for model analysis apps created and managed by the ModelSEED team
Language:Python1 9 0
ModelSEED/ModelSEEDTemplates
Language:Ruby1 10 0
ModelSEED/ProjectNotebooks
Repository for Jupyter notebooks and associated data for various research projects of the ModelSEED team
Language:Jupyter Notebook1 8 03
ModelSEED/AGORA2_models
2 0
ModelSEED/BRAVENotebooks
2 0
ModelSEED/GenomeImporter
Module for importing a genome into KBase from SEED, PATRIC, or RAST
Language:Perl9 0
ModelSEED/KB-CommunityModeling
Language:Python2 0
ModelSEED/KB-ModelSEEDCommunity
KBase SDK module for community modeling apps created and managed by the ModelSEED team
Language:Python9 0
ModelSEED/KB-ProbabilisticModeling
Language:Python2 0
ModelSEED/KB-QuantitativePlantAnalysis
Language:Python10 0
ModelSEED/KBaseNotebooks
Language:Jupyter Notebook2 0
ModelSEED/MAGNotebooks
2 0
ModelSEED/MicrobiomeNotebooks
Language:Jupyter Notebook2 0
ModelSEED/MINE-app
Web application for the MINE databases
Language:CSS2 0
ModelSEED/mine-website
Language:JavaScript10 0
ModelSEED/ModelSEED-REST
Experimental JSON REST API for ModelSEED (not supported)
Language:JavaScript8 01
ModelSEED/ModelSEED2Notebooks
Language:Jupyter Notebook2 01
ModelSEED/MSDatabaseNotebooks
Notebooks that manipulate the ModelSEED Database
Language:Jupyter Notebook1
ModelSEED/MSSeedSupportServer
Server to support authentication and retrieval of genomes from the SEED environment
Language:Perl8 01
ModelSEED/OntologyNotebooks
Language:Jupyter Notebook9 01
ModelSEED/PhenotypeNotebooks
Language:Jupyter Notebook2 0
ModelSEED/SynBioNotebooks
2 0