ModelSEED/ModelSEED-UI

Issues

• Fungi in ModelSEED

  #163 opened a year ago by lisakmalins
  4

• Plant models are not valid SBML due to duplicated IDs

  #162 opened 2 years ago by cdiener
  1

• model seed API

  #161 opened 2 years ago by wupeng1998
  0

• README needs update

  #159 opened 2 years ago by chrstf
  0

• wrong reaction information in model seed, like rxn15543

  #130 opened 5 years ago by hongzhonglu
  0

• add compounds to medium: search does not work

  #122 opened 5 years ago by jotech
  4

• advance search button

  #103 opened 5 years ago by nconrad
  1

• Problem accessing new model - Authentication error

  #61 opened 5 years ago by diriano
  1

• Custom media compositions for peptides

  #49 opened 5 years ago by anna0101
  17

• New media gets saved with wrong type.

  #48 opened 5 years ago by nconrad
  2

• Beta/MVP effort

  #44 opened 5 years ago by nconrad
  5

• Support upload of fasta files to Shock

  #42 opened 5 years ago by nconrad
  1

• Fix my-media reconstruct dropdown

  #40 opened 5 years ago by nconrad
  3

• Switch order of ID and Media columns in FBA simulations tab (small improvment)

  #36 opened 5 years ago by jplfaria
  3

• reaction/cpd panels close when clicking on on them

  #33 opened 5 years ago by nconrad
  2

• Show private patric genomes under my models

  #32 opened 5 years ago by nconrad
  3

• Problems in search

  #30 opened 5 years ago by mendessoares
  20

• Additional IDs for biochemistry

  #29 opened 5 years ago by jplfaria
  5

• Concatenating and Minifying using Grunt

  #109 opened 6 years ago by samseaver
  0

• Do I need a RAST/PATRIC login if I want to view ModelSEED models when running on a local machine?

  #102 opened 6 years ago by krcurtis
  5

• incorrect metabolite alias

  #85 opened 6 years ago by aalsiyabi
  0

• improve UX by making model rxn/cpd counts links

  #35 opened 9 years ago by nconrad
  1

• Group heatmap by subsystems

  #31 opened 9 years ago by nconrad
  1

• support generic editable tables

  #25 opened 9 years ago by nconrad
  1

• FBA with Genes KOs and make reaction KO actually work (currently it does nothing :().

  #38 opened 9 years ago by jplfaria
  4

• clearify deltaG and deltaGErrs

  #41 opened 9 years ago by nconrad
  1

• FBA Run ID naming

  #28 opened 9 years ago by jplfaria
  1

• json download name of a model is "model" instead of model name

  #45 opened 9 years ago by nconrad
  1

• update genome links to new patric website

  #63 opened 8 years ago by nconrad
  2

• Malformed EC strings in JSON

  #56 opened 7 years ago by smoretti
  1

• Reaction 1281967929 cannot be accessed on the web interface

  #54 opened 7 years ago by smoretti
  1

• Unicode strings in few compound and reaction names

  #53 opened 7 years ago by smoretti
  1

• Wrong InChI for cpd00030

  #64 opened 7 years ago by smoretti
  3

• Compound with weird charge

  #59 opened 7 years ago by smoretti
  1

• Compound with unexpected characters in formula

  #58 opened 7 years ago by smoretti
  2

• Some reactions don't have reactants and/or products

  #55 opened 7 years ago by smoretti
  3

• Malformed InChI

  #60 opened 7 years ago by smoretti
  2

• Untrimmed names/aliases and duplicated aliases

  #62 opened 7 years ago by smoretti
  1

• Several biomass compounds

  #57 opened 8 years ago by smoretti
  0

• API hard coded limit reached

  #52 opened 8 years ago by smoretti
  2

• Cellular compartments list?

  #51 opened 8 years ago by smoretti
  0

• Does API return ModelSEED database version?

  #50 opened 8 years ago by smoretti
  0

• add missing B Subtilis legend info

  #43 opened 9 years ago by nconrad
  1

• Add reaction and compound pages

  #46 opened 9 years ago by nconrad
  1

• put queued jobs at top of jobs page

  #47 opened 9 years ago by nconrad
  0

• improve

  #34 opened 9 years ago by nconrad
  1

• FBA simulation of all single gene KOs

  #39 opened 9 years ago by jplfaria
  0

• Find "minimal media" output tab

  #37 opened 9 years ago by jplfaria
  0

• add media editor

  #26 opened 9 years ago by nconrad
  1

• Vizualize gap filling solutions

  #27 opened 9 years ago by jplfaria
  0