Issues
- 2
command line call
#97 opened by jflucier - 2
- 4
Paired Statistical Analysis
#96 opened by edunivers - 1
- 3
- 2
Related issues of missing values and row-order when merging (LFQ and FragPipe Analyst, DEP, DEP2)?
#94 opened by 1Moe - 2
Volcano plots ERROR when using DIA-NN data and multiple experimental conditions (4)
#92 opened by iolanda-vendrell - 2
How to analyse phosphoproteome data acquired using DDA with reference to the proteome data acquired using DIA?
#90 opened by YeelonYeoh - 8
Could not run DDA data on Fragpipe-Analyst
#88 opened by YeelonYeoh - 3
Not able to run Shiny server
#87 opened by rolivella - 4
Can FragPipe Analyst be used for viewing merged GeLCMS DDA files for LFQ of proteins/peptides?
#85 opened by lired01 - 3
- 2
FragPipe Analyst not working
#83 opened by pankajdwid - 4
- 3
PCA plot and sample correlation error
#81 opened by alyssaxin - 1
- 0
Handle errors when generating report
#41 opened by hsiaoyi0504 - 0
PCA plot other than PC1 and PC2
#45 opened by hsiaoyi0504 - 1
Capture some keywords in condition column and make it fixed at the right or left in DE
#58 opened by hsiaoyi0504 - 0
Detect unlabeled columns in TMT
#62 opened by hsiaoyi0504 - 0
- 2
Help with FragPipe-Analyst error
#79 opened by alyssaxin - 2
Volcano plot visualization revisit
#63 opened by hsiaoyi0504 - 1
- 2
Issues running locally with docker
#70 opened by fabianegli - 1
Add an option to switch the range of CV plot
#52 opened by hsiaoyi0504 - 1
Enrichment result will get updated automatically without pressing the Run Enrichment button again
#57 opened by hsiaoyi0504 - 9
- 1
Parameters are hard-coded in reports
#44 opened by hsiaoyi0504 - 1
- 1
- 0
volcano plot highlighting genes twice if the gene is selected in the table.
#51 opened by ginnyintifa - 1
Layout and plotting issue
#61 opened by hsiaoyi0504 - 1
Only features with low enough percentage of missing values should be imputed
#42 opened by hsiaoyi0504 - 3
missing value heatmap should use the raw data rather than a filtered version of data
#34 opened by hsiaoyi0504 - 2
- 0
Enrichment result looks blurry
#55 opened by hsiaoyi0504 - 2
- 1
- 0
median CV% is NA
#53 opened by hsiaoyi0504 - 1
CV should be computed using untrasformed data
#50 opened by hsiaoyi0504 - 2
- 3
Filtering based on samples in same condition
#36 opened by hsiaoyi0504 - 1
- 1
- 2
Change all `Fragpipe` to `FragPipe`
#37 opened by fcyu - 2
- 1
Add a version number to somewhere in the webpage so that we can track the versions.
#38 opened by fcyu - 0
color PCA by plex number in TMT
#29 opened by hsiaoyi0504 - 3
DIA example needs to be adjusted
#32 opened by hsiaoyi0504