Genomic Data Commons

Pinned Repositories

gdc-client
GDC Data Transfer Tool
Language:Python147 39 040
gdc-dnaseq-cwl
CWL for GDC DNASeq workflows
Language:Common Workflow Language22 21 013
gdc-docs
Official repository for GDC User Guides in Markdown format
Language:JavaScript60 18 019
gdc-frontend-framework
Language:TypeScript10 15 00
gdc-workflow-overview
Overview of GDC Harmonization Workflows
27 14 09
gdcdatamodel
Translation layer between the GDC Data Dictionary and psqlgraph
Language:Python28 35 03
gdcdictionary
Data dictionary for the GDC
Language:Python50 43 1137
maf-lib
Python package for processing and creating MAF files for the GDC
Language:Python8 9 103
portal-ui
GDC Data Portal UI
Language:JavaScript18 19 010
psqlgraph
Library for graph-like storage in postgresql using sqlalchemy
Language:Python21 31 06

Genomic Data Commons's Repositories

NCI-GDC/dnacopy-tool
Language:R2 10 02
NCI-GDC/sheepdog-orig
API for herding data submissions
Language:Python2 20 01
NCI-GDC/bwa-docker
Language:Makefile1 8 01
NCI-GDC/gdc-rnaseq-tool
Utility scripts for RNA-seq workflows
Language:Python1 11 11
NCI-GDC/oncogrid
Javascript library for visualizing OncoGrids and related tracks
Language:JavaScript1 1 00
NCI-GDC/varscan-cwl
CWL for GDC VarScan2
Language:Common Workflow Language1 10 01
NCI-GDC/varscan-tool
GDC VarScan2 docker
Language:Python1 11 01
NCI-GDC/cwltool
Common Workflow Language reference implementation
Language:Web Ontology Language1 03
NCI-GDC/dcc-import
Reference data importers
Language:Java1 0
NCI-GDC/fastq_cleaner
FASTQ Vendor Failed Reads Removal
Language:C++
NCI-GDC/fastqc-docker
Language:Makefile8 0
NCI-GDC/fqvendorfail-docker
Software docker for fqvendorfail
Language:C
NCI-GDC/gdc_submitter_translation_ui
Language:HTML2 3
NCI-GDC/json-to-sqlite
Language:Makefile1
NCI-GDC/mirna-profiler-docker
Language:Dockerfile10 0
NCI-GDC/muse-cwl
CWL for GDC MuSE
Language:Common Workflow Language11 01
NCI-GDC/muse-tool
GDC MuSE docker
Language:Python9 01
NCI-GDC/mutect2-cwl
CWL for GDC GATK3 MuTect2
Language:Common Workflow Language10 03
NCI-GDC/mutect2-tool
GDC GATK3 MuTect2 docker
Language:Python10 02
NCI-GDC/samtools-docker
Language:Makefile9 01
NCI-GDC/somaticsniper-cwl
CWL for GDC SomaticSniper
Language:Common Workflow Language10 01
NCI-GDC/somaticsniper-tool
GDC SomaticSniper docker
Language:Python10 01
NCI-GDC/stress-test-save-sets
Language:JavaScript1
NCI-GDC/vep-tool
GDC VEP Plugins
Language:Perl10 01