NINGCHINA

NINGCHINA's Stars

• YuLab-SMU/ggtree

  :christmas_tree:Visualization and annotation of phylogenetic trees

  Language:R817172

• Textualize/rich

  Rich is a Python library for rich text and beautiful formatting in the terminal.

  Language:Python48.1k1.7k

• daijiang/rtrees

  rtrees: an R package to assemble phylogenetic trees from mega-trees

  Language:R3010

• bbfamily/abu

  阿布量化交易系统(股票，期权，期货，比特币，机器学习) 基于python的开源量化交易，量化投资架构

  Language:Python11.6k3.7k

• vcftools/vcftools

  A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

  Language:C++483147

• divamgupta/diffusionbee-stable-diffusion-ui

  Diffusion Bee is the easiest way to run Stable Diffusion locally on your M1 Mac. Comes with a one-click installer. No dependencies or technical knowledge needed.

  Language:JavaScript12.1k596

• rspatial/terra

  R package for spatial data handling https://rspatial.github.io/terra/reference/terra-package.html

  Language:C++52787

• abyzovlab/CNVpytor

  a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

  Language:Python16922

• vdicolab/hsdm

  Habitat Suitability and Distribution Models: with applications in R. A book written by A. Guisan, W. Thuiller and N.E. Zimmermann.

  3151

• SarahEDalrymple/SarahEDalrymple.github.io

  Ecologist working to understand the impacts of global change on threatened species and ecosystems, and trying to find solutions to address the extinction crisis.

  1

• SarahEDalrymple/All-purpose-biomod

  A repository for R script that has been developed to make biomod2 more accessible. Designed for my students. Work in progress...

  Language:R66

• biomodhub/biomod2

  BIOMOD is a computer platform for ensemble forecasting of species distributions, enabling the treatment of a range of methodological uncertainties in models and the examination of species-environment relationships.

  Language:R7720

• Shijia818/Tree-of-life

  Language:R2

• mrmaxent/Maxent

  Maximum entropy modelling of species geographic distributions.

  Language:Java21789

• liamrevell/phytools

  Language:R19856

• jingwanglab/Populus_genomic_prediction_climate_vulnerability

  Language:R3214

• BioEasy/EasyCodeML

  EasyCodeML: A visual tool for analysis of selection using CodeML

  Language:C7420

• camwebb/phylomatic-ws

  Improved web service for phylomatic

  Language:HTML101

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.1k703

• xjtu-omics/SVision

  Detecting genome structural variants with deep learning in single molecule sequencing

  Language:Python9411

• chhylp123/hifiasm

  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

  Language:C++50184

• schneebergerlab/syri

  Synteny and Rearrangement Identifier

  Language:Cython30536

• schneebergerlab/GameteBinning

  Language:C++113

• SeleniumHQ/selenium

  A browser automation framework and ecosystem.

  Language:Java29.8k8k

• ariya/phantomjs

  Scriptable Headless Browser

  Language:C++29.4k5.8k

• zhouqiansolab/Haplotype-resolved-potato-genome

  The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform the analyses in the paper 'Haplotype-resolved genome analyses of a heterozygous diploid potato' (under review).

  Language:Python225

• ComparativeGenomicsToolkit/cactus

  Official home of genome aligner based upon notion of Cactus graphs

  Language:C481106

• WWXkenmo/Bioinfor_researchers_atlas

  413

• tangerzhang/ALLHiC

  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

  Language:Perl16739

• bwa-mem2/bwa-mem2

  The next version of bwa-mem

  Language:C++69793