NOAA-FIMS/FIMS

Issues

• [Bug]: FIMS runs regardless of the length of the `log_obs_error` and `log_Fmort` inputs

  #622 opened 9 months ago by Bai-Li-NOAA
  2

• [Developer Issue]: FIMS needs an overview document

  #634 opened 9 months ago by Bai-Li-NOAA
  0

• [Developer Issue]: i being uninitialized

  #690 opened 3 months ago by kellijohnson-NOAA
  2

• [Developer Issue]: actions/checkout@v3 uses deprecated Node.js version

  #656 opened 2 months ago by kellijohnson-NOAA
  1

• [Bug:] dependabot.yml needs to be in main branch to work

  #747 opened a month ago by k-doering-NOAA
  0

• Failed tests if log_devs are estimated

  #744 opened a month ago by kellijohnson-NOAA
  0

• [Bug:] Parameter class initial_value_m and final_value_m representation in R

  #743 opened a month ago by msupernaw
  0

• [Developer Issue]: reorganize tests and clean up hacky data modifications when prepare test data

  #730 opened 2 months ago by Bai-Li-NOAA
  0

• [Bug:] run-clang-format failed on dev

  #736 opened 2 months ago by Bai-Li-NOAA
  1

• [Bug]: proportion female at age

  #638 opened 9 months ago by KyleShertzer-NOAA
  5

• [Developer Issue]: wrapper function to run a FIMS model

  #621 opened 9 months ago by kellijohnson-NOAA
  2

• [Feature]: calculate model start/end time, model call, and version of FIMS

  #617 opened 2 months ago by k-doering-NOAA
  8

• [feature:] do we need a get_parameter_names function?

  #666 opened 2 months ago by Andrea-Havron-NOAA
  1

• [Bug:] R wrapper cannot accommodate multiple fleets with landings

  #707 opened 2 months ago by kellijohnson-NOAA
  3

• Every fleet operates on every population

  #725 opened 2 months ago by kellijohnson-NOAA
  0

• [Developer Issue]: update actions to use upload-artifact v4 instead of v3

  #718 opened 2 months ago by k-doering-NOAA
  1

• Clean up accessors in FIMSFrame

  #701 opened 3 months ago by kellijohnson-NOAA
  0

• [Developer Issue]: M2 Quality control task list

  #662 opened 7 months ago by kellijohnson-NOAA
  1

• Make documentation in rcpp_interface Full sentences.

  #691 opened 3 months ago by peterkuriyama-NOAA
  1

• [Bug:] wrapper functions and Rcpp objects going out of scope.

  #706 opened 3 months ago by msupernaw
  0

• [Bug:] CreateTMBModel() segfaults with new version of `Rcpp` (1.0.13)

  #686 opened 3 months ago by ChristineStawitz-NOAA
  4

• [feature:] Warnings and Notes from R CMD check

  #671 opened 3 months ago by arni-magnusson
  1

• [Developer Issue]: Add enum for nll_type

  #613 opened 10 months ago by Andrea-Havron-NOAA
  0

• [Feature]: Allow sdlog (or scalar multiplier) as estimable

  #627 opened 9 months ago by kellijohnson-NOAA
  1

• [Developer Issue]: Need GitHub actions to turn off FIMS_DEBUG_LOG()

  #681 opened 5 months ago by kellijohnson-NOAA
  0

• [Developer Issue]: Use GHA to create a pull request to modify pull requests

  #660 opened 8 months ago by Bai-Li-NOAA
  9

• [Developer Issue]: add a standalone GHA test for checking the speed of FIMS parallel runs

  #677 opened 5 months ago by Bai-Li-NOAA
  0

• [Developer Issue]: refactor nll cleanup

  #644 opened 5 months ago by Andrea-Havron-NOAA
  6

• [Developer Issue]: Add variable_map

  #645 opened 5 months ago by Andrea-Havron-NOAA
  6

• [Developer Issue]: Refactor distribution interface

  #646 opened 5 months ago by Andrea-Havron-NOAA
  1

• [Bug:] Inconsistent inputs for evaluate() functions in the recruitment module

  #653 opened 8 months ago by Bai-Li-NOAA
  3

• [Developer Issue]: distributions need to be in fims_math

  #674 opened 5 months ago by kellijohnson-NOAA
  0

• [Developer Issue]: No link to conventional commits in Reviewer checklist

  #667 opened 6 months ago by kellijohnson-NOAA
  0

• [Developer Issue]: Relocate and document FIMS folder descriptions

  #650 opened 8 months ago by Bai-Li-NOAA
  2

• [Developer Issue]: convert JSON output to R list following plan in design doc

  #664 opened 7 months ago by iantaylor-NOAA
  2

• [Developer Issue]: Add Doxygen formulas for functions in the population module

  #659 opened 8 months ago by Bai-Li-NOAA
  0

• Make the R tests more modular

  #606 opened 8 months ago by Bai-Li-NOAA
  4

• [Developer Issue]: create a vignette to demonstrate how to run FIMS in parallel

  #648 opened 8 months ago by Bai-Li-NOAA
  0

• [Developer Issue]: Investigate the requirements for FIMS reproducibility

  #649 opened 8 months ago by Bai-Li-NOAA
  3

• [Bug]: `type.convert()` is reformatting date to character without leading zeros in data_mile1

  #639 opened 8 months ago by kellijohnson-NOAA
  2

• [Developer Issue]: Add documentation to new files from refactor-distributions

  #612 opened 9 months ago by Andrea-Havron-NOAA
  1

• [Developer Issue]: Add documentation to rcpp_interface_base on dev branch

  #608 opened 9 months ago by Andrea-Havron-NOAA
  1

• [Developer Issue]: complete tests in test-unit-rcpp-interface-base-variable-vector

  #609 opened 9 months ago by Andrea-Havron-NOAA
  1

• [Developer Issue]: Documenting things using Rcpp or C++

  #635 opened 9 months ago by kellijohnson-NOAA
  0

• [Bug]: Difference in point estimates from tmb sdreport vs. tmb output object

  #616 opened 9 months ago by k-doering-NOAA
  26

• [Feature]: Specify input sample size for weight-at-age data

  #629 opened 9 months ago by kellijohnson-NOAA
  1

• [Bug]: recruitment nll

  #614 opened 10 months ago by Andrea-Havron-NOAA
  9

• [Developer Issue]: GHA: call-doc-and-style-r workflow failed to run due to SAML single sign-on

  #598 opened 10 months ago by Bai-Li-NOAA
  2

• [Developer Issue]: code coverage not getting calculated for pull requests

  #605 opened 10 months ago by iantaylor-NOAA
  2

• [Feature]: estimate initial depletion

  #600 opened 10 months ago by ChristineStawitz-NOAA
  0