NVIDIA-Genomics-Research/rapids-single-cell-examples
Examples of single-cell genomic analysis accelerated with RAPIDS
Jupyter NotebookApache-2.0
Issues
- 0
Leiden CLustering takes too long
#121 opened by siddharthamantrala - 2
- 1
- 0
- 1
- 0
change of cuml library
#117 opened by yubin-ai - 15
CUDARuntimeError in Notebooks
#73 opened by Intron7 - 1
- 1
Illegal Memory Access: 1.3M cells RTX A6000 48GB out of memory on scaling step
#116 opened by jyuan-sd - 0
fix `rapids_scanpy_funcs.highly_variable_genes`
#111 opened by hw-ju - 0
can't run inference with atacworks pretrained model within the container on A100
#110 opened by hw-ju - 0
- 0
TypeError: rank_genes_groups() got multiple values for argument 'groups'
#108 opened by archieandrews10 - 3
csr_matrix with the .get method will return "Last value of index pointer should be less than the size of index and data arrays"
#94 opened by linmuchuiyang - 1
- 3
Cannot open UCX library: (null) in PCA analysis of 1M_brain_gpu_analysis_multigpu
#103 opened by ChenPeizhan - 0
error of read_with_filter function
#102 opened by 111kakaluote - 0
The results consistency of RAPIDS implementation
#101 opened by 111kakaluote - 3
Residual GPU Memory usage
#96 opened by r614 - 5
- 1
conda import environment not working
#93 opened by tnnandi - 0
- 2
Colab implementation
#30 opened by saketkc - 0
rapids for pyscenic
#89 opened by Wulin-Tan - 0
Bug in preprocess_in_batches
#87 opened by avantikalal - 1
Nearest neighbors graph computation crashes
#72 opened by manock - 16
VRAM and cell numbers
#14 opened by JBreunig - 6
- 0
[BUG] Many of cuML's models that use cublas/cusolver/cusparse are limited in the number of cells that can be processed
#54 opened by cjnolet - 0
[FEA] Add batching option to `filter_cells` and `filter_genes` in `rapids_scanpy_funcs`
#53 opened by cjnolet - 2
OverflowError: value too large to convert to int
#50 opened by slowkow - 3
- 3
import rapids_scanpy_funcs
#10 opened by JBreunig - 2
CuSparseError: CUSPARSE_STATUS_ALLOC_FAILED
#11 opened by JBreunig