Pinned Repositories
blog
covmuller
Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID
fos-proposals
:gift_heart: :penguin: Archive of GSoC proposals
gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
hatex
'h'omeworks, 'a'ssignments 'tex' for courses at USC
pySCTransform
Python package to perform normalization and variance-stabilization of single-cell data
pyseqlogo
Python package to plot sequence logos
pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
rna-seq-snakemake
Snakemake based pipeline for RNA-Seq analysis
ribotricer
A tool for accurately detecting actively translating ORFs from Ribo-seq data
saketkc's Repositories
saketkc/fos-proposals
:gift_heart: :penguin: Archive of GSoC proposals
saketkc/pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
saketkc/gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
saketkc/pyseqlogo
Python package to plot sequence logos
saketkc/pySCTransform
Python package to perform normalization and variance-stabilization of single-cell data
saketkc/moca
:m: Tool for motif conservation analysis
saketkc/scRNA_NB_comparison
Scripts to reproduce the analyses in the paper "Comparison and evaluation of statistical error models for scRNA-seq"
saketkc/covmuller
Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID
saketkc/pyvirchow
Tools for whole slide image processing and classification
saketkc/blog
saketkc/covid19bharat_data
India's district level covid19 data. This is the continued effort carry forwarded by what covid19india.org's team had initiated
saketkc/iitb-library-sms-interface
Sends automated SMSes reminding you of due dates from IITB moodle/asc
saketkc/sctransform
R package for modeling single cell UMI expression data using regularized negative binomial regression
saketkc/2023_Albicans_Flucanazole
saketkc/2024_Albicans_Biofilm
saketkc/bisc-104
Teaching material used for BISC-104L[Fall 2016] at USC Edit
saketkc/BISC-305
saketkc/cobolt
A Python package for jointly analyzing multimodal single-cell sequencing data
saketkc/genomeofindia
Scripts for GenomeOfIndia substack
saketkc/hmispy
saketkc/infohet
Information in Heterogeneity
saketkc/misc_bed_availability_scraper
saketkc/overdispersion_explorer
overdispersion_explorer
saketkc/ParseBioscience_Barcodes_Corrector
Scripts to generate corrected barcodes list for a list of custom barcodes for ParseBiosciences kit
saketkc/pdfs
Curated writeups
saketkc/pertinent
saketkc/pyro-rethinking
Statistical Rethinking with Pyro
saketkc/scVI
Deep generative modeling for single-cell omics data
saketkc/signac
R toolkit for the analysis of single-cell chromatin data
saketkc/weatherunion
R package to fetch temperature, wind soeed, precipitation and related information from Zomato's weatherunion.com API.