This repository contains scripts and notebooks to generate figures for our paper Comparison and evaluation of statistical error models for scRNA-seq .
- sctransform
- pysctransform - Python implementation of sctranform with v1 and v2 regularization
An archive of all the raw datasets used in the analysis is avaialable on this Google drive.
All the notebooks to generate the figures are in the notebooks with a web and an Rmd version.
Scripts for running analyses on filtered datasets is in the snakemake directory.