NeuralEnsemble/cobrawap

Issues

• Avoid using "|" character in naming profile variants

  #81 opened a month ago by cosimolupo
  1

• Upper limit for PuLP version < 2.8.0 seems to be required

  #82 opened 25 days ago by cosimolupo
  2

• Pointing the correct previous stage when running "cobrawap run_stage" command

  #68 opened 7 months ago by cosimolupo
  1

• Continuous adjustment of naming conventions in preparation for the 1.0.0 release

  #63 opened 10 months ago by mdenker
  0

• Replace the deprecated 'subworkflow' snakemake feature

  #57 opened a year ago by rgutzen
  1

• Better warning message when running Cobrawap from the first stage

  #75 opened 5 months ago by mdenker
  0

• Improve transparency of the compatibility of stages for the user

  #69 opened 7 months ago by mdenker
  0

• Add Guide "How to contribute a block"

  #11 opened 5 years ago by rgutzen
  0

• Non-causal wavefront-searching algorithm in stage 04

  #32 opened 4 years ago by araihC
  1

• Stage02 - Parallelization error

  #25 opened 9 months ago by araihC
  3

• Plotting output for each block

  #7 opened 9 months ago by rgutzen
  2

• Create an EBRAINS mirror

  #53 opened 9 months ago by mdenker
  1

• Evaluating a field of local velocity in stage 05

  #31 opened 9 months ago by araihC
  2

• Interfacing simulation output with Wavescalephant

  #28 opened 9 months ago by epastorelli
  3

• integrate wave type classification

  #17 opened 9 months ago by rgutzen
  3

• Set-up automatic documentation

  #10 opened 9 months ago by rgutzen
  0

• Adding consistent docstrings for each block

  #9 opened 9 months ago by rgutzen
  0

• nixio version in environment

  #47 opened 2 years ago by gulpgiulia
  1

• OSError with geos_c when creating the environment [fixed]

  #41 opened 4 years ago by gulpgiulia
  0

• Fitting amplitude distributions (stage03) is not robust

  #37 opened 4 years ago by rgutzen
  2

• Bug in stage02-normalization script

  #40 opened 4 years ago by araihC
  1

• Parabolic interpolation for searching minima

  #30 opened 4 years ago by araihC
  2

• data_entry step fails with most IDIBAPS files

  #19 opened 4 years ago by apdavison
  2

• paths get mixed up when running the pipeline in parallel on multiple datasets

  #26 opened 4 years ago by rgutzen
  1

• plots in stage 3 trigger_times_channelXY.png are not being created automatically

  #27 opened 4 years ago by rgutzen
  0

• Spatial smoothing in stage 02

  #29 opened 4 years ago by araihC
  1

• Handling the cortical orientation of the recorded area

  #33 opened 4 years ago by rgutzen
  1

• using randomly selected plotting channels vs. creating reports

  #18 opened 4 years ago by rgutzen
  2

• speed up trigger detection via hilbert_phase

  #24 opened 4 years ago by rgutzen
  2

• Stage 01 - ValueError

  #23 opened 4 years ago by araihC
  1

• UnavailableInvalidChannel Error - Build the Python environment

  #21 opened 4 years ago by araihC
  1

• Stage 02 - ImportError

  #22 opened 5 years ago by araihC
  1

• Stage 02 - background_substraction: KeyError

  #20 opened 5 years ago by araihC
  1

• [Block] stage04 - remove_short_states

  #13 opened 5 years ago by rgutzen
  0

• [Block] stage02 - deconvolution

  #12 opened 5 years ago by rgutzen
  1

• [Block] check_input

  #16 opened 5 years ago by rgutzen
  1

• Improve top-level Readme

  #8 opened 5 years ago by rgutzen
  2

• Stage Readme files

  #3 opened 5 years ago by rgutzen
  0

• Add "config profiles"

  #6 opened 5 years ago by rgutzen
  1

• Integrate fairgraph

  #4 opened 5 years ago by rgutzen
  0

• How to make utils.py available in all scripts?

  #14 opened 5 years ago by rgutzen
  1

• Allow optional plotting of multiple channels, i.e. having multiple plot outputs per rule

  #15 opened 5 years ago by rgutzen
  1

• Improve usage of pipeline-level config

  #5 opened 5 years ago by rgutzen
  1