NeuroDesk/neurocommand

Issues

• add Readme.md to the ml help output

  #304 opened 4 months ago by stebo85
  1

• Fatal error if pwd is not mounted in the container

  #273 opened 10 months ago by marcelzwiers
  4

• make module system more flexible

  #152 opened 2 years ago by stebo85
  3

• Centrally managed neurocommands

  #261 opened a year ago by marcelzwiers
  3

• export itksnap singularity container: GUI fails

  #259 opened a year ago by dkp
  28

• neurocommand doesn't update the menu on play / lab

  #165 opened a year ago by stebo85
  7

• Spec for the parametrization of the neurodesk apps

  #212 opened a year ago by yarikoptic
  1

• issues contributing tutorials/building github pages

  #195 opened 2 years ago by kel-github
  3

• installation instructions missing from getting started

  #196 opened 2 years ago by kel-github
  1

• refactor app.json

  #187 opened 2 years ago by stebo85
  1

• Add missing icons to neurocommand

  #184 opened 2 years ago by stebo85
  1

• environmentvariables from containers need to exposed through module load

  #175 opened 2 years ago by stebo85
  0

• Test Tunel as a visual remote interface for HPC setups

  #170 opened 2 years ago by stebo85
  1

• Sydney cvmfs objectstorage missing containers

  #162 opened 2 years ago by aswinnarayanan
  2

• update github CI version to 22.04?

  #116 opened 2 years ago by stebo85
  1

• Add update neurocommand option to neurocommand menu

  #143 opened 2 years ago by aswinnarayanan
  0

• issue installing R packages using Neurodesk Docker

  #133 opened 2 years ago by kel-github
  13

• add a new line to apps.json to specify an additional mountpoint

  #118 opened 2 years ago by stebo85
  7

• Add/update latest tag

  #121 opened 2 years ago by stdweird
  7

• output /README.md on module load

  #114 opened 2 years ago by stebo85
  0

• deduplication

  #111 opened 3 years ago by yarikoptic
  1

• How to run the a Singularity container within Neurodesktop so it will be writable?

  #107 opened 3 years ago by civier
  8

• test no-home option as default for neurocommand (maybe use fakehome option?)

  #101 opened 3 years ago by stebo85
  0

• Remove miniconda and niypye from baseimage once python setup works on cvfms

  #102 opened 3 years ago by stebo85
  1

• should we add a writable overlay to the containers?

  #100 opened 3 years ago by stebo85
  4

• mriqc has no category?

  #99 opened 3 years ago by stebo85
  1

• Rename neurodesk repo to neurocommand

  #97 opened 3 years ago by aswinnarayanan
  1

• Transparent singularity only runs on container download

  #75 opened 4 years ago by aswinnarayanan
  0

• Handle same executables in two different Singularity containers

  #65 opened 3 years ago by civier
  3

• Adding standard recommended way to add storage to a running VNM

  #61 opened 3 years ago by civier
  6

• Giving Dave permission to edit neurocontainers

  #93 opened 3 years ago by civier
  3

• A recent freesurfer container might be corrupted

  #91 opened 3 years ago by civier
  7

• Running Neurodesk with sandboxes and without internet access

  #89 opened 3 years ago by civier
  5

• Add tools to handle BIDS conversion

  #86 opened 3 years ago by civier
  1

• Wrong text under the NeuroDesk installer heading

  #79 opened 3 years ago by civier
  1

• problem mounting /30days when downloading Freesurfer image from CLI

  #76 opened 3 years ago by thomshaw92
  2

• Broken logo pictures in the website

  #69 opened 4 years ago by civier
  2

• Sometimes when choosing a GUI application from the menu for the first time, it won't open

  #49 opened 4 years ago by civier
  2

• Accessing data files that come with software packages using external applications

  #46 opened 4 years ago by civier
  5

• Problem with WSL2 install using RDP

  #60 opened 4 years ago by thomshaw92
  3

• Add the "screen" command to base VNM image

  #59 opened 4 years ago by civier
  2

• Singularity containers do not run when working directory is a sshfs mount

  #47 opened 4 years ago by civier
  10

• ONLY FIX IF PROBLEM REPLICATES -- Problem after resizing

  #58 opened 4 years ago by civier
  2

• Changing VNM screen size should be in menu

  #52 opened 4 years ago by civier
  2

• Play with the idea of distributing-container-images-on-cernvm-fs

  #44 opened 4 years ago by stebo85
  1

• Seg fault when closing fsleyes

  #50 opened 4 years ago by civier
  1

• Freesurfer container looks for license file in wrong place

  #45 opened 4 years ago by civier
  3

• Why not loading all modules by default?

  #48 opened 4 years ago by civier
  4

• Right now 40 minutes into a download of AFNI and it's nowhere near done. Would be useful to have an estimate of the overall size of the download and overall progress. This is especially the case for users in regions less well served by fast or unlimited internet.

  #39 opened 4 years ago by stebo85
  2

• Running VNM on a MacBook pro as per the instructions. All went well, but in an open terminal window, module avail returns an error:

  #38 opened 4 years ago by stebo85
  1