Nicholas-NVS

Nicholas-NVS's Stars

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k619

• bpucker/FlavonoidFriday

  Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation, and repelling herbivores.This repository provides additional background to the #FlavonoidFriday tweets

  134

• lmigueel/Bioinformatics-scripts

  Repository for Bioinformatics scripts and basic programs developed by L.M.C

  Language:HTML82

• BenLangmead/bowtie

  An ultrafast memory-efficient short read aligner

  Language:C++25977

• DaehwanKimLab/hisat2

  Graph-based alignment (Hierarchical Graph FM index)

  Language:C++470114

• BenLangmead/bowtie2

  A fast and sensitive gapped read aligner

  Language:C++660159

• pachterlab/kallisto

  Near-optimal RNA-Seq quantification

  Language:C648170

• lmigueel/Bioinformatica

  Pipelines e scripts para análises em Bioinformática

  17826

• OpenDroneMap/FIELDimageR

  FIELDimageR: A R package to analyze orthomosaic images from agricultural field trials. This package is a compilation of functions to analyze pos-mosaicking images from research fields, and allows to: crop the image; remove soil effect; build vegetation indices; rotate the image; build the plot shapefile; extract information for each plot; and evaluate stand count, canopy percentage, and plant height.

  Language:R23790

• NBISweden/GAAS

  Genome Assembly and Annotation Service code

  Language:Perl19946

• JBerthelier/PiRATE

  PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)

  185

• ishengtsai/perlscripts_jit

  All the misc. perl scripts

  Language:Perl37

• Geo-omics/scripts

  Metagenomic pipeline and other general scripts used in the lab.

  Language:Perl3422

• ENCODE-DCC/kentUtils

  UCSC command line bioinformatic utilities

  Language:C16695