OHBA Analysis Group
Public repository for OHBA analysis group code
Oxford Centre for Human Brain Activity, Warneford Hospital, Oxford, UK
Pinned Repositories
emd-mirror
Mirror repository for EMD package: issue-tracking and development happens at https://gitlab.com/emd-dev/emd
GLEAN
Group Level Exploratory Analysis of Networks
HMM-MAR
Toolbox for segmentation and characterisation of transient connectivity
MEG-ROI-nets
Stationary network analysis for MEG
osl-core
Matlab tools for running M/EEG analyses - NO LONGER SUPPORTED - Please use Python Version Instead: https://github.com/OHBA-analysis/osl
osl-dynamics
Methods for studying dynamic functional brain activity in neuroimaging data.
osl-ephys
OHBA Software Library Electrophys Analysis Tools
Quinn2018_TaskHMM
Task-Evoked Dynamic Network Analysis through Hidden Markov Modelling
Quinn2019_BurstHMM
Transient event detection with Hidden Markov Models
Quinn2021_Waveform
Analysis scripts accompanying "Within-cycle instantaneous frequency profiles report oscillatory waveform dynamics" https://doi.org/10.1101/2021.04.12.439547
OHBA Analysis Group's Repositories
OHBA-analysis/HMM-MAR
Toolbox for segmentation and characterisation of transient connectivity
OHBA-analysis/osl-dynamics
Methods for studying dynamic functional brain activity in neuroimaging data.
OHBA-analysis/osl-ephys
OHBA Software Library Electrophys Analysis Tools
OHBA-analysis/osl-core
Matlab tools for running M/EEG analyses - NO LONGER SUPPORTED - Please use Python Version Instead: https://github.com/OHBA-analysis/osl
OHBA-analysis/Quinn2018_TaskHMM
Task-Evoked Dynamic Network Analysis through Hidden Markov Modelling
OHBA-analysis/MEG-ROI-nets
Stationary network analysis for MEG
OHBA-analysis/Quinn2019_BurstHMM
Transient event detection with Hidden Markov Models
OHBA-analysis/Quinn2021_Waveform
Analysis scripts accompanying "Within-cycle instantaneous frequency profiles report oscillatory waveform dynamics" https://doi.org/10.1101/2021.04.12.439547
OHBA-analysis/Quinn2022_GLMSpectrum
OHBA-analysis/abeysuriya_wc_isp
Code for Abeysuriya et al. "A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks"
OHBA-analysis/Cho2024_MEEG_RSN
Scripts for the Cho et al. (2024) manuscript
OHBA-analysis/Gohil2024_NetworkAnalysisOfTaskData
Example scripts for Gohil et al., "Dynamic Network Analysis of Electrophysiological Task Data" (2024).
OHBA-analysis/Higgins2020_Neuron
This repository contains all the files used for the analysis in the paper "Replay bursts in humans coincide with activation of the default mode and parietal alpha networks", Higgins et al Neuron 2020
OHBA-analysis/emd-mirror
Mirror repository for EMD package: issue-tracking and development happens at https://gitlab.com/emd-dev/emd
OHBA-analysis/parcellations
A collection of parcellations
OHBA-analysis/ohba-external
External libraries used by OSL and related OHBA software
OHBA-analysis/RepresentationalDynamicsModelling
OHBA-analysis/Tinda
Temporal-Interval Network Density Analysis
OHBA-analysis/Huang2024_ModelVariabilityWithEmbeddings
Scripts for the "Modelling subject variability in dynamic functional brain networks using embeddings" manuscript
OHBA-analysis/OHBA-analysis.github.io
OHBA-analysis/osl-docs
Documentation for Matlab OSL - NO LONGER SUPPORTED - Please use Python version instead: https://github.com/OHBA-analysis/osl
OHBA-analysis/Gohil2024_AgeEffectsRSNs
Scripts for the results in Gohil et al. (2024).
OHBA-analysis/Gohil2024_NormativeHMM
Scripts for performing a normative HMM analysis with M/EEG data.
OHBA-analysis/Huang2024_EvidenceForUncoupledDynamics
Scripts for the "Evidence for transient, uncoupled power and functional connectivity dynamics" manuscript.
OHBA-analysis/Kohl2023_PD_HMM
OHBA-analysis/meg-simulation
Scripts to simulate MEG data
OHBA-analysis/OHBA-Examples
Example scripts used by OHBA
OHBA-analysis/ohba_maxfilter
Python tool for batch processing Megin Maxfilter processing on fif MEG files
OHBA-analysis/ohba_meg_qc
Python tool for generating quality check reports from MEG recordings
OHBA-analysis/Trubshaw2024_NeurodegenerativeDisorders
Analysis scripts for reproducing the results in (Trubshaw, 2024).