/GLEAN

Group Level Exploratory Analysis of Networks

Primary LanguageMATLAB

GLEAN

Group Level Exploratory Analysis of Networks
Adam Baker 2015

GLEAN is a MATLAB pipeline for identifying patterns of covariation from M/EEG band-limited power using a Hidden Markov Model (HMM) or Independent Component Analysis (ICA), written for SPM12.

Please refer to the wiki for more information.

Update notes

Previous versions of GLEAN did not have the package folder +glean. Legacy code can be updated by replacing underscores with a dot. For example

glean_run

becomes

glean.run

Previous versions also included an internal copy of HMM-MAR and MEG-ROI-nets. These now need to be set up as prerequisites for GLEAN.

Setup

To set up from GitHub, perform the following

  • Clone this repository
  • Clone https://github.com/OHBA-analysis/HMM-MAR
  • Clone https://github.com/OHBA-analysis/ohba-external

To use GLEAN

  • Initialize ohba-external by adding it to your path, and running the startup script e.g.

      addpath('some_directory/ohba-external')
  ohba_external_startup

  • Initialize HMM-MAR by adding it to your path

      addpath(genpath('some_directory/ohba-external'))

    see readme file in HMM-MAR for further information

  • Add the GLEAN repository to your path e.g.

      addpath('some_directory/GLEAN')