OHDSI/PhenotypeLibrary

Incorrect name for cohort 1219

Closed this issue · 1 comments

The cohort name of 1219 is "Acute Bronchitis", but this should be "Hyperlipidemia":

cohort <- getPlCohortDefinitionSet(1219)
cohort$cohortName
[1] "Acute Bronchitis"

writeLines(cohort$json)
{
	"cdmVersionRange" : ">=5.0.0",
	"PrimaryCriteria" : {
		"CriteriaList" : [
			{
				"ConditionOccurrence" : {
					"CodesetId" : 0,
					"ConditionTypeExclude" : false
				}
			}
		],
		"ObservationWindow" : {
			"PriorDays" : 0,
			"PostDays" : 0
		},
		"PrimaryCriteriaLimit" : {
			"Type" : "First"
		}
	},
	"ConceptSets" : [
		{
			"id" : 0,
			"name" : "Hyperlipidemia",
			"expression" : {
				"items" : [
					{
						"concept" : {
							"CONCEPT_ID" : 432867,
							"CONCEPT_NAME" : "Hyperlipidemia",
							"STANDARD_CONCEPT" : "S",
							"STANDARD_CONCEPT_CAPTION" : "Standard",
							"INVALID_REASON" : "V",
							"INVALID_REASON_CAPTION" : "Valid",
							"CONCEPT_CODE" : "55822004",
							"DOMAIN_ID" : "Condition",
							"VOCABULARY_ID" : "SNOMED",
							"CONCEPT_CLASS_ID" : "Clinical Finding"
						},
						"isExcluded" : false,
						"includeDescendants" : true,
						"includeMapped" : false
					},
					{
						"concept" : {
							"CONCEPT_ID" : 437530,
							"CONCEPT_NAME" : "Disorder of lipid metabolism",
							"STANDARD_CONCEPT" : "S",
							"STANDARD_CONCEPT_CAPTION" : "Standard",
							"INVALID_REASON" : "V",
							"INVALID_REASON_CAPTION" : "Valid",
							"CONCEPT_CODE" : "267431006",
							"DOMAIN_ID" : "Condition",
							"VOCABULARY_ID" : "SNOMED",
							"CONCEPT_CLASS_ID" : "Clinical Finding"
						},
						"isExcluded" : false,
						"includeDescendants" : false,
						"includeMapped" : false
					}
				]
			}
		}
	],
	"QualifiedLimit" : {
		"Type" : "First"
	},
	"ExpressionLimit" : {
		"Type" : "First"
	},
	"InclusionRules" : [],
	"CensoringCriteria" : [],
	"CollapseSettings" : {
		"CollapseType" : "ERA",
		"EraPad" : 0
	},
	"CensorWindow" : {}
}

Thanks @schuemie . it will be fixed for next release.