Pinned Repositories
Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM v4 database
Andromeda
AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.
aws.s3
Amazon Simple Storage Service (S3) API Client
CdmUploadR
An R script for uploading date from CSV files in to the OMOP Common Data Model.
cehr-bert
CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
JustAnotherCovidPlot
NcCorrelation
Some code to explore correlation between negative control outcomes
OhdsiAuthorGraph
Code for visualizing the network of OHDSI authors. Nodes represent authors, links represent co-authorships.
RagPlayground
Some early explorations of building RAG pipelines
TradeRouteOptimizer
A Java application for computing optimal trade routes for the game Elite: Dangerous
schuemie's Repositories
schuemie/CdmUploadR
An R script for uploading date from CSV files in to the OMOP Common Data Model.
schuemie/TradeRouteOptimizer
A Java application for computing optimal trade routes for the game Elite: Dangerous
schuemie/JustAnotherCovidPlot
schuemie/NcCorrelation
Some code to explore correlation between negative control outcomes
schuemie/OhdsiAuthorGraph
Code for visualizing the network of OHDSI authors. Nodes represent authors, links represent co-authorships.
schuemie/RagPlayground
Some early explorations of building RAG pipelines
schuemie/Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM v4 database
schuemie/Andromeda
AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.
schuemie/aws.s3
Amazon Simple Storage Service (S3) API Client
schuemie/cehr-bert
CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
schuemie/ClusteringPlayground
R code for exploring patient clustering using the OHDSI tools
schuemie/CohortMethod
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
schuemie/DataQualityDashboard
A tool to help improve data quality standards in observational data science.
schuemie/DistributedRegressionEval
[Under development] R code for evaluating approaches to regression across a distributed network of databases.
schuemie/ExampleStudy
This is an example network study
schuemie/EhdenPlot
An attempt at creating a cool infographic for EHDEN
schuemie/IncidenRateBenchmark
A benckmark evaluating various approaches to incidence rate calculation
schuemie/InteractionsEval
Evaluation of methods for computing interactions in causal effect estimation
schuemie/JsonSchemaTest
A test of using Json schema to document R objects
schuemie/LatentSpace
Some explorations of latent space in electronic health records..
schuemie/LegendSummary
R code for creating result summaries per target-comparator-outcome from the LEGEND results
schuemie/MediationAnalysis
Some explorations into mediation analysis in observational data
schuemie/MedlineAnalysis
An R package for performing analyses on Medline. Requires ohdsi/MedlineXmlToDatabase to have been executed
schuemie/odbc
Connect to ODBC databases (using the DBI interface)
schuemie/PatientLevelPrediction
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
schuemie/pda
PDA: Privacy-preserving Distributed Algorithm
schuemie/TheBookOfOhdsi
The Book of OHDSI repository
schuemie/TreatmentPatterns
An R package to analyze treatment patterns of a study population of interestÂ