Xmx option

Question

Closed this issue 6 years ago · 4 comments

Hi.

I'm getting occasional weird errors where bbduk is specifing negative Xmx e.g -Xmx-205

Please can you add an option to override this for instance to specify -Xmx1g to the bbmap tools.

Thanks

Answer 1 · 2018-10-29T12:40:11.000Z

I've also had this problem very occasionally - I'll get a fix written and released in the near future!

Answer 2 · 2018-10-29T13:58:05.000Z

This has now been implemented in ConFindr 0.4.5 - the pypi package has been updated, and I'll get the conda package updated as well later today.

Answer 3 · 2018-10-29T13:59:35.000Z

Thanks for quick turn around. Building into my Docker image now and testing shortly :)

Answer 4 · 2018-10-29T17:49:18.000Z

Can confirm that's working nicely from PyPi and Conda. Thanks