This repository provides source code links to the evalutated deep learning methods from the manuscript: Assessing deep learning algorithms in cis-regulatory motif finding based on genomic sequencing data.
If you have any questions, please contact Qin Ma qin.ma@osumc.edu.
| Model | Code |
|---|---|
| DESSO | Link |
| Deepbind | Link |
| Basset | Link |
| DeepHistone | Link |
| TFImpute | Link |
| DeFine | Link |
| DeepSEA | Link |
| Zeng | Link |
| DANN_TF | Link |
| DeepSNR | Link |
| FactorNET | Link |
| DeeperBind | Link |
| DeepCpG | Link |
| DanQ | Link |
| WSCNNLSTM | Link |
| iDeepV | Link |
| iDeepE | Link |
| Deep-RBPPred | Link |
| iDeepS | Link |
| iDeep | Link |