OSU_BMBL

The Ohio State University, Columbus, Ohio

Pinned Repositories

deepmaps
Single-cell biological network inference using a heterogeneous graph transformer
Language:HTML62 4 64
DESSO
A DL-based framework for sequence and shape motif identification in the human genome
Language:MATLAB9 4 39
IRIS
A Shiny web server for interactive visualization and analysis of RNA-seq data
Language:R22 5 68
IRIS3
IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)
Language:JavaScript10 5 11
marsgt
Multi-omics data analysis for rare population inference using single-cell graph transformer
Language:Jupyter Notebook13 3 22
QUBIC2
A novel biclustering algorithm for analyses of transcriptomic data.
Language:HTML17 3 02
scDEAL
Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
Language:Jupyter Notebook44 4 1711
scGNN2.0
Language:Jupyter Notebook10 1 60
scread-protocol
Language:R15 2 01
ssread
A single-cell and spatial RNA-seq database for Alzheimer’s Disease
Language:Vue17 2 46

OSU_BMBL's Repositories

OSU-BMBL/deepmaps
Single-cell biological network inference using a heterogeneous graph transformer
Language:HTML62 4 64
OSU-BMBL/scDEAL
Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
Language:Jupyter Notebook44 4 1711
OSU-BMBL/IRIS
A Shiny web server for interactive visualization and analysis of RNA-seq data
Language:R22 5 68
OSU-BMBL/ssread
A single-cell and spatial RNA-seq database for Alzheimer’s Disease
Language:Vue17 2 46
OSU-BMBL/scread-protocol
Language:R15 2 01
OSU-BMBL/marsgt
Multi-omics data analysis for rare population inference using single-cell graph transformer
Language:Jupyter Notebook13 3 22
OSU-BMBL/IRIS3
IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)
Language:JavaScript10 5 11
OSU-BMBL/scGNN2.0
Language:Jupyter Notebook10 1 60
OSU-BMBL/DESSO
A DL-based framework for sequence and shape motif identification in the human genome
Language:MATLAB9 4 39
OSU-BMBL/BMBL-analysis-notebooks
A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.
Language:HTML7 3 02
OSU-BMBL/RESEPT
A deep-learning framework for characterizing and visualizing tissue architecture from spatially resolved transcriptomics
Language:Python7 1 02
OSU-BMBL/scread-backend
Language:JavaScript4 1 13
OSU-BMBL/deepmotif-benchmark
3 3 0
OSU-BMBL/IDAM
Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data
Language:C3 3 11
OSU-BMBL/bmbl-class-notebooks
Language:HTML2 2 04
OSU-BMBL/MEGA
a deep learning-based python package for identifying cancer-associated intratumoral microbes.
Language:Python2 1 00
OSU-BMBL/NOTCH1-cardiac-lineage-scRNAseq
Impaired Human Cardiac Cell Development due to NOTCH1 Deficiency
Language:HTML2 2 01
OSU-BMBL/SpaGFT
Detect
Language:Jupyter Notebook2 0 0
OSU-BMBL/AD-spatial-code
Code for manuscript "Spatially resolved transcriptomics reveals gene signatures underlying the vulnerability of 2 human middle temporal gyrus in Alzheimer's disease"
Language:R1 2 01
OSU-BMBL/BMI8130-notebooks-2021
Language:HTML1 0 0
OSU-BMBL/IOM
Language:Python1 2 01
OSU-BMBL/BMBL-Tutorial-SOP
2 0
OSU-BMBL/CEMIG
A new motif prediction algorithm called CEMIG (cis regulatory motif influence using de Bruijn graph)
Language:C++2 03
OSU-BMBL/IRISFGM
Development repository for the IRISFGM package for submission purposes
OSU-BMBL/micah
Language:Python1
OSU-BMBL/SeqATU
Language:C++4 0
OSU-BMBL/Spinal-cord-scRNAseq
Supplementary code for the analyses presented in the manuscript: Microglia coordinate intracellular interactions during spinal cord repair in mice
Language:HTML3 11
OSU-BMBL/STREAM
STREAM: enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data
Language:R
OSU-BMBL/stream_analyses
Language:R
OSU-BMBL/tesa
Language:C2 01