Pinned Repositories
BMBL-analysis-notebooks
A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.
deepmaps
Single-cell biological network inference using a heterogeneous graph transformer
IRIS
A Shiny web server for interactive visualization and analysis of RNA-seq data
IRIS3
IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)
marsgt
Multi-omics data analysis for rare population inference using single-cell graph transformer
QUBIC2
A novel biclustering algorithm for analyses of transcriptomic data.
scDEAL
Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
scGNN2.0
scread-protocol
ssread
A single-cell and spatial RNA-seq database for Alzheimer’s Disease
OSU_BMBL's Repositories
OSU-BMBL/deepmaps
Single-cell biological network inference using a heterogeneous graph transformer
OSU-BMBL/scDEAL
Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
OSU-BMBL/ssread
A single-cell and spatial RNA-seq database for Alzheimer’s Disease
OSU-BMBL/marsgt
Multi-omics data analysis for rare population inference using single-cell graph transformer
OSU-BMBL/scread-protocol
OSU-BMBL/BMBL-analysis-notebooks
A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.
OSU-BMBL/scGNN2.0
OSU-BMBL/IRIS3
IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)
OSU-BMBL/DESSO
A DL-based framework for sequence and shape motif identification in the human genome
OSU-BMBL/RESEPT
A deep-learning framework for characterizing and visualizing tissue architecture from spatially resolved transcriptomics
OSU-BMBL/scread-backend
OSU-BMBL/SpaGFT
Detect
OSU-BMBL/deepmotif-benchmark
OSU-BMBL/IDAM
Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data
OSU-BMBL/Spinal-cord-scRNAseq
Supplementary code for the analyses presented in the manuscript: Microglia coordinate intracellular interactions during spinal cord repair in mice
OSU-BMBL/bmbl-class-notebooks
OSU-BMBL/MEGA
a deep learning-based python package for identifying cancer-associated intratumoral microbes.
OSU-BMBL/NOTCH1-cardiac-lineage-scRNAseq
Impaired Human Cardiac Cell Development due to NOTCH1 Deficiency
OSU-BMBL/AD-spatial-code
Code for manuscript "Spatially resolved transcriptomics reveals gene signatures underlying the vulnerability of 2 human middle temporal gyrus in Alzheimer's disease"
OSU-BMBL/BMI8130-notebooks-2021
OSU-BMBL/CEMIG
A new motif prediction algorithm called CEMIG (cis regulatory motif influence using de Bruijn graph)
OSU-BMBL/IOM
OSU-BMBL/STREAM
STREAM: enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data
OSU-BMBL/stream_analyses
OSU-BMBL/tesa
OSU-BMBL/BMBL-Tutorial-SOP
OSU-BMBL/IRISFGM
Development repository for the IRISFGM package for submission purposes
OSU-BMBL/micah
OSU-BMBL/scGNN-frontend
a typescript frontend for scGNN
OSU-BMBL/SQUAD
Spatial QUality Assessment and Diagnosis