Olink-Proteomics/OlinkRPackage
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
RAGPL-3.0
Issues
- 1
Normalization issue
#410 opened by yitengfei120011 - 1
test
#407 opened by kathy-nevola - 1
Test
#386 opened by kathy-nevola - 4
- 1
test
#385 opened by kathy-nevola - 2
[BUG]
#384 opened by kathy-nevola - 0
test
#383 opened by kathy-nevola - 1
Olink enrichment for olink_ordinalRegression
#348 opened by karpat90 - 0
multiple testing correction in olink_one_non_parametric_posthoc outside the group_by
#346 opened by klevdiamanti - 2
- 1
Semi-paired analysis
#325 opened by tdfy - 4
Working on All cases data: t-test
#333 opened by karpat90 - 2
Error while reading excel file (read_NPX function)
#334 opened by russof85 - 0
- 0
Pathway enrrichment from pre-computed statistics
#251 opened by klevdiamanti - 0
Mulitple flags in Normalization column
#290 opened by klevdiamanti - 2
- 3
PRIDE Archive integration with Olink
#281 opened by ypriverol - 1
Bridge selector returns 1 samples less than expected when requesting max number of samples based on missing frequency
#252 opened by klevdiamanti - 3
olink_lmer_posthoc
#249 opened by M4artin - 0
- 1
- 2
Olink annotation database
#215 opened by Shicheng-Guo - 1
olink_ttest levels
#214 opened by wangjiawen2013 - 1
Check if datasets were normalized with the same approach prior to bridge/subset normalization
#186 opened by klevdiamanti - 10
olink using Enrichment is gene database
#209 opened by wdb-web - 0
[BUG] read_NPX fails when SampleID contains '#'
#205 opened by klevdiamanti - 1
Test [BUG] 2
#204 opened by kathy-nevola - 2
Error in filter(., Panel == "Olink CARDIOMETABOLIC") : object 'Panel' not found
#203 opened by alisahinmd - 0
Jira Test1[FEATURE]
#195 opened by kathy-nevola - 0
Test [BUG]
#194 opened by kathy-nevola - 0
Test 2[BUG]
#193 opened by kathy-nevola - 1
Test Issue
#192 opened by kathy-nevola - 1
- 0
[FEATURE] have the option to not use ggrepel::geom_label_repel for outliers in pca/umap
#157 opened by klevdiamanti - 2
Better documentation in Friedman tests
#160 opened by khkk378 - 1
Non-intuitive interface for Friedman tests
#161 opened by khkk378 - 1
- 2
Bug in visualize pathway enrichment
#162 opened by khkk378 - 1
Friedman test must have df
#159 opened by khkk378 - 4
[BUG] `olink_ttest` does not have `estimate` column by default in conda package
#155 opened by abiddanda54gene - 0
Wrong output for olink_dist_plot() in vignette
#112 opened by OlaCaster - 7
Packaging for conda?
#130 opened by abiddanda54gene - 2
Solid tissue vs plasma based Olink data
#126 opened by Shicheng-Guo - 1
- 0
olink_plate_randomizer: Plate spreading not working when SubjectColumn is not set
#116 opened by kristianHoden - 0
Bug in olink_pca_plot
#117 opened by simfor - 1
TNF, IL6 and CXCL8 in 4 panels
#113 opened by Shicheng-Guo - 3
best strategy to handle outliers?
#109 opened by Shicheng-Guo - 1
Recommendation to handle values lower than LOD?
#106 opened by Shicheng-Guo