OpenMendel

Modern Statistical Genetics Software

Pinned Repositories

MendelIHT.jl
Iterative hard thresholding for l0 penalized regression
Language:Julia22 5 124
MendelImpute.jl
OpenMendel package for haplotyping and imputation
Language:Julia25 3 71
MendelPlots.jl
Julia package for plotting results from GWAS
Language:Julia10 7 32
OpenMendel.github.io
The main website for the OpenMendel project.
12 6 32
OrdinalGWAS.jl
Genome-wide association studies (GWAS) for ordered categorical phenotypes
Language:Julia21 7 267
OrdinalMultinomialModels.jl
ordered multinomial models
Language:Julia11 6 102
SnpArrays.jl
Compressed storage for SNP data
Language:Julia44 6 709
TrajGWAS.jl
Language:Julia13 6 161
Tutorials
Basic OpenMendel tutorials
Language:HTML11 5 16
VCFTools.jl
Julia utilities for handling VCF files
Language:Julia18 4 154

OpenMendel's Repositories

OpenMendel/SnpArrays.jl
Compressed storage for SNP data
Language:Julia44 6 709
OpenMendel/MendelImpute.jl
OpenMendel package for haplotyping and imputation
Language:Julia25 3 71
OpenMendel/MendelIHT.jl
Iterative hard thresholding for l0 penalized regression
Language:Julia22 5 124
OpenMendel/OrdinalGWAS.jl
Genome-wide association studies (GWAS) for ordered categorical phenotypes
Language:Julia21 7 267
OpenMendel/VCFTools.jl
Julia utilities for handling VCF files
Language:Julia18 4 154
OpenMendel/TrajGWAS.jl
Language:Julia13 6 161
OpenMendel/OpenMendel.github.io
The main website for the OpenMendel project.
12 6 32
OpenMendel/OrdinalMultinomialModels.jl
ordered multinomial models
Language:Julia11 6 102
OpenMendel/Tutorials
Basic OpenMendel tutorials
Language:HTML11 5 16
OpenMendel/BGEN.jl
Language:Julia10 5 120
OpenMendel/MendelPlots.jl
Julia package for plotting results from GWAS
Language:Julia10 7 32
OpenMendel/VarianceComponentModels.jl
Utilities for fitting and testing variance component models
Language:Julia8 6 135
OpenMendel/WiSER.jl
Within-subject variance estimation by robust regression (WiSER)
Language:Julia8 8 61
OpenMendel/ASHG-OpenMendelWorkshop-2020-Oct
OpenMendel tutorials for ASHG Workshop
Language:HTML7 9 10
OpenMendel/OpenADMIXTURE.jl
Language:Julia7 4 31
OpenMendel/ADMIXTURE.jl
Julia wrapper of the ADMIXTURE program for estimating ancestry
Language:Julia6 8 1
OpenMendel/LangeSymposium-ProgrammingWorkshop-20202022
OpenMendel tutorials for Lange's Symposium Programming Workshop
Language:HTML5 9 31
OpenMendel/MendelBase.jl
MendelBase contains the base functions of OpenMendel.
Language:Julia5 10 03
OpenMendel/MendelGWAS.jl
This package performs standard Genome-wide Association Studies.
Language:Julia5 8 82
OpenMendel/PGENFiles.jl
Language:Julia3 4 21
OpenMendel/TraitSimulation.jl
Simulate phenotypes from any GLM model
Language:Julia3 2 31
OpenMendel/ClassicMendel
Official Mendel package distribution
2 8 1
OpenMendel/GeneticVariantBase.jl
Language:Julia2 7 11
OpenMendel/HaploADMIXTURE.jl
Language:Julia2 4 0
OpenMendel/MendelGeneticCounseling.jl
This analysis option performs risk calculations for genetic counseling problems.
Language:Julia2 7 02
OpenMendel/MendelLocationScores.jl
This analysis option maps a trait via the method of Location Scores, i.e., multipoint linkage analysis.
Language:Julia2 7 01
OpenMendel/MendelSearch.jl
MendelSearch is a program for function optimization. Search permits bounds and linear constraints to be imposed on parameters and, in statistical applications, computes asymptotic standard errors and correlations of parameter estimates.
Language:Julia2 8 01
OpenMendel/MendelTwoPointLinkage.jl
This analysis option performs two-point linkage analysis.
Language:Julia2 7 11
OpenMendel/MendelKinship.jl
This analysis option computes kinship and other identity coefficients.
Language:Julia1 7 61
OpenMendel/QuasiCopula.jl
A Flexible Quasi-Copula Distribution for Statistical Modeling
Language:Julia1 3 11