Pinned Repositories
BGEN.jl
MendelIHT.jl
Iterative hard thresholding for l0 penalized regression
MendelImpute.jl
OpenMendel package for haplotyping and imputation
MendelPlots.jl
Julia package for plotting results from GWAS
OpenMendel.github.io
The main website for the OpenMendel project.
OrdinalGWAS.jl
Genome-wide association studies (GWAS) for ordered categorical phenotypes
OrdinalMultinomialModels.jl
ordered multinomial models
SnpArrays.jl
Compressed storage for SNP data
TrajGWAS.jl
VCFTools.jl
Julia utilities for handling VCF files
OpenMendel's Repositories
OpenMendel/CodingStyle
Coding style guidelines for OpenMendel packages
OpenMendel/GeneticCounseling_ASHG2019
Tutorials and data sets for ASHG 2019 workshop on Genetic Counseling.
OpenMendel/MendelAimSelection.jl
This analysis option selects the SNPs that are most informative at predicting ancestry for your data — the best Ancestry Informative Markers (AIMs).
OpenMendel/MendelEstimateFrequencies.jl
This analysis option calculates a likelihood-based estimate of allele frequencies.
OpenMendel/MendelGameteCompetition.jl
This analysis option implements a gamete competition analysis, which is a generalization of the TDT analysis.
OpenMendel/MendelGeneDropping.jl
This package performs gene dropping with several useful options for the output.
OpenMendel/RegressionTests
Collection of test cases for OpenMendel framework