Pinned Repositories
AllenInstituteNeuroML
Example files to test interaction between models developed at the Allen Brain Institute and NeuroML
BlueBrainProjectShowcase
A project to illustrate how models and data from the Blue Brain Project can be converted to NeuroML and PyNN
Contribute
A central repository for issues listing OSB projects looking for contributors
IzhikevichModel
GitHub repository for an OSB project for model from http://izhikevich.org/publications/whichmod.htm
MejiasEtAl2016
Implementation of Mejias et al. 2016: Feedforward and feedback frequency-dependent interactions in a large-scale laminar network of the primate cortex
osb-model-validation
Tools for automated model validation in OpenSourceBrain projects
OSB_Documentation
Source repository for documentation at Open Source Brain
OSBv2
An updated version of the Open Source Brain platform
Thalamocortical
GitHub repository for an OSB project containing a thalamocortical network model based on Traub et al. 2005
WilsonCowan
Wilson–Cowan model
OpenSourceBrain's Repositories
OpenSourceBrain/AllenInstituteNeuroML
Example files to test interaction between models developed at the Allen Brain Institute and NeuroML
OpenSourceBrain/OSBv2
An updated version of the Open Source Brain platform
OpenSourceBrain/WilsonCowan
Wilson–Cowan model
OpenSourceBrain/MejiasEtAl2016
Implementation of Mejias et al. 2016: Feedforward and feedback frequency-dependent interactions in a large-scale laminar network of the primate cortex
OpenSourceBrain/osb-model-validation
Tools for automated model validation in OpenSourceBrain projects
OpenSourceBrain/Thalamocortical
GitHub repository for an OSB project containing a thalamocortical network model based on Traub et al. 2005
OpenSourceBrain/OpenCortex
A framework for building cortical network models on OSB
OpenSourceBrain/CelegansNeuromechanicalGaitModulation
C. elegans neuromechanical gait modulation model from Boyle, Berri and Cohen 2012
OpenSourceBrain/Brunel2000
Sparsely connected spiking neuron network from Brunel 2000
OpenSourceBrain/OSB_API
API to access contents of OSB repository. Currently a simple Python API is available
OpenSourceBrain/DANDIArchiveShowcase
Scripts for interacting with the DANDI Archive
OpenSourceBrain/NetPyNEShowcase
NetPyNE & NeuroML interactions
OpenSourceBrain/PyNNShowcase
A repository for testing interactions/conversions between NeuroML & PyNN
OpenSourceBrain/SmithEtAl2013-L23DendriticSpikes
Model from: Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo, Smith, Smith, Branco & Häusser, Nature 2013
OpenSourceBrain/BahlEtAl2012_ReducedL5PyrCell
A set of reduced models of layer 5 pyramidal neurons from Bahl et al. 2012
OpenSourceBrain/SolinasEtAl-GolgiCell
GitHub repository for an OSB project containing a cerebellar Golgi cell based on Solinas et al 2007
OpenSourceBrain/TheVirtualBrainShowcase
OpenSourceBrain/BrianShowcase
A testbed for interactions between Brian and NeuroML2/LEMS
OpenSourceBrain/ghk-nernst
Using Goldman-Hodgkin-Katz and Nernst from LEMS/NeuroML
OpenSourceBrain/NeuroMorpho
Set of example morphologies taken from NeuroMorpho.org in NeuroML format
OpenSourceBrain/OSB_Videos
Some ideas for introductory video for OSB website
OpenSourceBrain/SBMLShowcase
OSB showcase of interactions between SBML and NeuroML
OpenSourceBrain/StochasticityShowcase
A repository for neuronal models containing stocastic elements (e.g. input currents, syanpses, ion channels) in various formats
OpenSourceBrain/243446
Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells (Zang et al 2018)
OpenSourceBrain/262670
Locust olfactory network with GGN and full KC population in the mushroom body (Ray et al 2020)
OpenSourceBrain/ArborShowcase
Examples of Arbor<->NeuroML
OpenSourceBrain/MOOSEShowcase
Showcase project illustrating interactions between MOOSE & NeuroML
OpenSourceBrain/NESTShowcase
Mapping NeuroML2/LEMS to NEST
OpenSourceBrain/OlfactoryTest
A repository for testing conversion of a number of elements (mainly ion channels) from olfactory bulb models to NeuroML 1/2
OpenSourceBrain/OSB_homepage
OSB homepage