Pinned Repositories
EpiModel
Mathematical Modeling of Infectious Disease Dynamics
Smith_etal_Enterococcus
C. difficile metabolic modeling in co-culture with E. faecalis
any2fasta
Convert various sequence formats to FASTA
autoEDA-resources
A list of software and papers related to automatic and fast Exploratory Data Analysis
bowtie2
A fast and sensitive gapped read aligner
EpiModelHIV
Network Models of HIV Transmission Dynamics among MSM and Heterosexuals
galaxy-setup
Setup code for galaxy 這是我在台大記中邊蓋的 Galaxy 邊理解的故事
godata
Codebase and Community of Practice for Go.Data (https://www.who.int/tools/godata), an outbreak investigation tool developed by WHO in collaboration with Global Outbreak Alert and Response Network Partners.
individual
R Package for individual based epidemiological models
Kleborate
OtakuZerg's Repositories
OtakuZerg/TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
OtakuZerg/panaroo
An updated pipeline for pangenome investigation
OtakuZerg/Kpneu_MIC_prediction
Scripts and input files used for machine learning prediction of MIC in K. pneumoniae
OtakuZerg/pod5-file-format
Pod5: a high performance file format for nanopore reads.
OtakuZerg/python-cheatsheet
All-inclusive Python cheatsheet
OtakuZerg/treeWAS
treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
OtakuZerg/bowtie2
A fast and sensitive gapped read aligner
OtakuZerg/phandango
an interactive viewer for populations of bacterial genomes linked by a phylogeny
OtakuZerg/Kleborate
OtakuZerg/individual
R Package for individual based epidemiological models
OtakuZerg/unitig-caller
Methods to determine sequence element (unitig) presence/absence
OtakuZerg/EpiModel
Mathematical Modeling of Infectious Disease Dynamics
OtakuZerg/pyseer
SEER, reimplemented in python 🐍🔮
OtakuZerg/Mash
Fast genome and metagenome distance estimation using MinHash
OtakuZerg/godata
Codebase and Community of Practice for Go.Data (https://www.who.int/tools/godata), an outbreak investigation tool developed by WHO in collaboration with Global Outbreak Alert and Response Network Partners.
OtakuZerg/ModellingR_TMwR
Code and content for "Tidy Modeling with R"
OtakuZerg/practical-statistics-for-data-scientists
Code repository for O'Reilly book
OtakuZerg/Smith_etal_Enterococcus
C. difficile metabolic modeling in co-culture with E. faecalis
OtakuZerg/stability-sdk
SDK for interacting with stability.ai APIs (e.g. stable diffusion inference)
OtakuZerg/ML-YouTube-Courses
📺 A place to discover the latest machine learning courses on YouTube.
OtakuZerg/EpiModelHIV
Network Models of HIV Transmission Dynamics among MSM and Heterosexuals
OtakuZerg/any2fasta
Convert various sequence formats to FASTA
OtakuZerg/RedDog
OtakuZerg/ngs-book-dataset
OtakuZerg/svm-r-markdown-templates
This is my (deprecated) suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. DOWNLOAD {stevetemplates} INSTEAD.
OtakuZerg/srst2
Short Read Sequence Typing for Bacterial Pathogens
OtakuZerg/autoEDA-resources
A list of software and papers related to automatic and fast Exploratory Data Analysis
OtakuZerg/galaxy-setup
Setup code for galaxy 這是我在台大記中邊蓋的 Galaxy 邊理解的故事