Issues
- 0
Update the Triplet autoregressive model to perform conditional sampling of values conditioned on the code
#107 opened by Oufattole - 1
- 0
Allow Predict Script to Include Custom Prefixed Keys in Output and Batch Indexes
#112 opened by Oufattole - 0
Add a predict script that generates embeddings
#109 opened by Oufattole - 0
The `Module` ABC class is confusing and should be re-done as a decorator or Mixin
#111 opened by mmcdermott - 1
Add API support for generation that allow generating data after a prediction time and caching both the predictions and the real data.
#104 opened by Oufattole - 8
Autoregressive Modeling
#30 opened by Oufattole - 0
Unconstrained Generative evaluation
#106 opened by Oufattole - 0
Zero-shot evaluation
#105 opened by Oufattole - 7
Dataset API and Configuration
#55 opened by mmcdermott - 0
Use JNRTs with their built in logic (e.g., slicing, flattening, vstacking, appending, and to-dense)
#70 opened by mmcdermott - 1
This line is wrong if collate type is not event stream because start is reset to zero, when that isn't what the target for this should be.
#84 opened by mmcdermott - 0
The EOS max seq length adjustment should happen in the dataset, not in the config, to avoid violating the user's inputs.
#99 opened by mmcdermott - 0
- 1
Is the max seq len constraint not respected if postpend EOS or prepend static is enabled?
#95 opened by mmcdermott - 6
All collate functions should be the same and static data pre-pending should happen in getitem.
#94 opened by mmcdermott - 0
Delete the unused `dynamic_only_collate`
#96 opened by mmcdermott - 0
- 1
Simplify the dataset index for now to just have a subject ID and an end event index.
#92 opened by mmcdermott - 0
- 0
- 0
Simplify the task processing logic and task dataframe expectations to reflect a purely single-task structure with the meds label schema guaranteed.
#75 opened by mmcdermott - 0
Complete synthetic testing data
#54 opened by Oufattole - 0
- 3
Doctests are not being run by github workflows
#91 opened by mmcdermott - 0
- 0
Tests take too long
#80 opened by mmcdermott - 0
- 1
- 0
Benchmarking
#78 opened by Oufattole - 0
- 0
We need to handle some way of not densifying the 4th dimension (text or ecgs for example) as that will be extremely sparse.
#71 opened by mmcdermott - 0
- 0
remove `get_task_info`, as we assume we are always doing binary classification. You should remove task_info related logic and errors from `load_subject` too.
#68 opened by mmcdermott - 0
Delete `set_inter_event_timestamps`
#61 opened by mmcdermott - 0
- 0
- 0
- 6
Fairness Evaluation
#48 opened by Oufattole - 0
Frozen reps kept in memory
#51 opened by teyaberg - 0
Update the Project description
#50 opened by Oufattole - 0
- 1
Investigate and resolve performance bottleneck
#44 opened by Oufattole - 0
- 0
- 0
- 0
- 1
Model Performance is Suboptimal
#39 opened by Oufattole - 0
Merge the Text Tokenization Branch
#29 opened by Oufattole - 0
Adding dummy data
#28 opened by Oufattole