PediHaplotyper
PediHaplotyper is software for assigning haploblock alleles
to individuals in a pedigree, based on observed marker
alleles that have already been phased by other software.
A haploblock is defined as a group of very closely linked
markers among which there are (almost) no recombinations
over the pedigree. For more information see the
PediHaplotyper manual.pdf
This is an R package. To install it, use the command
devtools::install_github("PBR/PediHaplotyper")
(for this, the devtools package must be installed first;
this is available from CRAN).
This is the version published (see citation below),
with only a few minor changes in the comments and the
DESCRIPTION file.
Citation:
Voorrips RE, Bink MCAM, Kruisselbrink JW,
Koehorst - van Putten HJJ, van de Weg WE (2016)
PediHaplotyper: Software for consistent assignment of
marker haplotypes in pedigrees.
Mol Breeding (2016) 36:119.
DOI 10.1007/s11032-016-0539
PBR/PediHaplotyper
PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees
R