/phe_gastro_references

The references that are used by PHE Gastrofor whole genome SNP calling

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PHE gastro reference genomes

AM933172 - Salmonella Enteritidis EBG 4

AE006468 - Salmonella Typhimurium EBG 1

CP000886 - Salmonella Paratyphi-B/Java EBG 5

AE014613 - Salmonella Typhi EBG 13

CP001138 - Salmonella Agona EBG 54

CO001113 - Salmonella Newport EBG 3

CP000026 - Salmonella Paratyphi A EBG 11