Public Health WGS in Europe
Initiative to share code and knowledge between PH institutes in Europe (and beyond) regarding whole genome sequencing.
Pinned Repositories
Ecoli_evaluation_set
Ecoli sequence for pipeline evaluation
PH-WGS-Meeting
Info from PH WGS meetings
phe_gastro_references
The references that are used by PHE Gastrofor whole genome SNP calling
ssi-listeria-molsero
molecular serotyping script for Listeria monocytogenes by Kristoffer Kiil
ssi-snp-pipeline
bwa/elprep/gatk snp pipline by Kristoffer Kiil
Public Health WGS in Europe's Repositories
PHWGS/phe_gastro_references
The references that are used by PHE Gastrofor whole genome SNP calling
PHWGS/ssi-listeria-molsero
molecular serotyping script for Listeria monocytogenes by Kristoffer Kiil
PHWGS/Ecoli_evaluation_set
Ecoli sequence for pipeline evaluation
PHWGS/PH-WGS-Meeting
Info from PH WGS meetings
PHWGS/ssi-snp-pipeline
bwa/elprep/gatk snp pipline by Kristoffer Kiil