/ssi-listeria-molsero

molecular serotyping script for Listeria monocytogenes by Kristoffer Kiil

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

ssi-listeria-molsero

molecular serotyping script for Listeria monocytogenes by Kristoffer Kiil

Requirements: python3 and bwa in path

Usage: Molsero.py -p primers.fsa contigfile.fsa

Output: The detected bands and their respective sizes are output, and the predicted serotype is printed. If the pattern doesn't match a serotype, Eureka is printed instead.