Pinned Repositories
Annotate-GFF
Add annotations to a GFF file
Aphrocallistes_vastus_genome
Aphrocallistes vastus genome
bio-phyta
HaploTC
Target Capturing Genome-wide Loci in Marine Haplosclerids
KeratoseMuseOMICS
Data for Agne et al. Keratose sponge MuseOMICS: setting reference points in dictyoceratid demosponge phylogeny
Kingdom-Assignment
A Ruby gem to parse BLASTplus XML output and annotate higher rank taxonomy
Kingdom-Extraction
Kingdom-Splitter
A Ruby gem to sort out bacterial, archaeal and viral contaminations from genomic data.
TransPi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
triangulation
Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-University Munich's Repositories
PalMuc/TransPi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
PalMuc/triangulation
Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
PalMuc/Annotate-GFF
Add annotations to a GFF file
PalMuc/bio-phyta
PalMuc/Aphrocallistes_vastus_genome
Aphrocallistes vastus genome
PalMuc/HaploTC
Target Capturing Genome-wide Loci in Marine Haplosclerids
PalMuc/Kingdom-Assignment
A Ruby gem to parse BLASTplus XML output and annotate higher rank taxonomy
PalMuc/Kingdom-Extraction
PalMuc/Kingdom-Splitter
A Ruby gem to sort out bacterial, archaeal and viral contaminations from genomic data.
PalMuc/2Tethya_genomes
The genome of the contractile demosponge Tethya wilhelma
PalMuc/A-short-LSU-rRNA-fragment-as-a-standard-marker-for-integrative-taxonomy-in-calcareous-sponges
Alignment, secondary structure files, trees & more of Voigt & Wörheide (2016) Organisms Diversity & Evolution 16:53-64. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.
PalMuc/beauty_in_the_beast
PalMuc/CalciteSea
Data repository for Conci N., Griesshaber E., Rivera-Vicéns R., Schmahl W., Vargas S. and Wӧrheide G (2022) Molecular and mineral responses of corals grown under artificial Calcite Sea conditions.
PalMuc/congeneric_synteny
analysis of synteny across animals
PalMuc/KeratoseMuseOMICS
Data for Agne et al. Keratose sponge MuseOMICS: setting reference points in dictyoceratid demosponge phylogeny
PalMuc/mitoclocks2018
PalMuc/Molecular-biodiversity-of-Red-Sea-demosponges.
Data set repository of Erpenbeck et al. (2016), Marine Pollution Bulletin 105:507-515. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.
PalMuc/Montipora_digitata_resources
Companion repository for González-Pech et al.
PalMuc/PlasticsBacteria
PalMuc/SONNE_Hexactinellida
PalMuc/Spongillida_Minimalist_Barcodes
Repository for: Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida. Authors: Dirk Erpenbeck, Markus Steiner, Astrid Schuster, Martin J. Genner, Renata Manconi, Roberto Pronzato, Bernhard Ruthensteiner, Didier van den Spiegel, Rob W.M. van Soest, and Gert Wörheide
PalMuc/TransPi_paper
TransPi - Supplementary files
PalMuc/PlasticsSponge
Sponges as bioindicators for microparticulate pollutants
PalMuc/Soft-Sponges-Tricky-Tree
Data sets of "Soft Sponges with Tricky Tree: On the Phylogeny of Dictyoceratid Sponges" by Erpenbeck D, Galitz A,Ekins M, Cook SdC, van Soest RWM, Hooper JNA, and Wörheide G. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.