PalMuc/TransPi

Issues

• Error: No module named 'busco'

  #38 opened a year ago by gabrielnsil
  4

• line 8: insilico_read_normalization.pl: command not found

  #55 opened 2 years ago by Rahimlou
  5

• issue of onlyAnn mode

  #58 opened 10 months ago by huawen-poppy
  0

• Fail to download uniprot_metazoa_33208.fasta

  #56 opened a year ago by dppss90008
  4

• Uniprot Metazoan database not downloaded due to changes in UniProt REST API

  #52 opened 2 years ago by IdoBar
  2

• Can I inform the direction of sequencing?

  #57 opened a year ago by katiacapel
  1

• Error in process busco4_dist

  #32 opened 3 years ago by HarukiNakamura
  3

• KEGG warn message

  #40 opened 3 years ago by vruggieri
  3

• Error executing process > 'transdecoder_predict

  #54 opened 2 years ago by AlexGaithuma
  1

• Missing transpi_env.yml

  #51 opened 2 years ago by roscampbell
  2

• TransPi on HPC failing to pull singularity image

  #53 opened 2 years ago by claumer
  3

• Signal P Compatibility Error?

  #44 opened 3 years ago by andypaige772
  2

• Unexpected run time, Trinity/salmon

  #46 opened 2 years ago by peterdfields
  1

• Trinotate preparation step in Precheck script silently fails with missing Perl module

  #50 opened 2 years ago by IdoBar
  0

• Operator `into` has been deprecated -- it's not available in DSL2 syntax

  #49 opened 2 years ago by SowmyaPulapet
  0

• problems running full analysis (--all option) and evigene's script

  #48 opened 2 years ago by BravoScarleth
  0

• Process requirement exceed available memory

  #47 opened 2 years ago by 1riyu
  0

• Process fastp (AC422_S687_S14_L001_R) terminated with an error exit status (1)

  #45 opened 2 years ago by 1riyu
  0

• Transdecoder cannot be found

  #43 opened 3 years ago by dbscjjm
  0

• Error Running Full Analysis: Process `fastp (1_R1)` terminated with an error exit status (255)

  #41 opened 3 years ago by andypaige772
  5

• Process `fastp (Ccelos_S1_L001)` terminated with an error exit status (127)

  #42 opened 3 years ago by RNiloP
  1

• Error in rRNAfilter and sortmerna

  #39 opened 3 years ago by dpaz-corals
  0

• Single-end reads

  #33 opened 3 years ago by kathrinannaotte
  3

• precheck not installing software

  #37 opened 3 years ago by hcliedtke
  2

• rnaquast conda error

  #34 opened 3 years ago by kathrinannaotte
  4

• rnaspades step dies with "AttributeError: module 'collections' has no attribute 'Hashable'"

  #35 opened 3 years ago by laninsky
  4

• When using singularity, busco step fails when it cannot find database

  #36 opened 3 years ago by laninsky
  2

• Error in process Trinotate.

  #30 opened 3 years ago by HarukiNakamura
  4

• Certificate check in BUSCO not working

  #31 opened 3 years ago by rivera10
  0

• Installation Issue (file yml?)

  #28 opened 3 years ago by francesconardi
  12

• Multiple taxid for database download

  #27 opened 3 years ago by rivera10
  0

• github update 4 days ago of TransPi.nf

  #26 opened 3 years ago by dbajpp0
  1

• error at TransPi_Report_Ind.Rmd

  #25 opened 3 years ago by dbajpp0
  1

• Using several databases

  #24 opened 3 years ago by dbajpp0
  1

• error in Trinity

  #22 opened 3 years ago by dbajpp0
  4

• Running onlyEvi

  #23 opened 3 years ago by andypaige772
  1

• TransPi Single End Reads?

  #21 opened 3 years ago by andypaige772
  1

• Java issue

  #20 opened 3 years ago by brittonstrickland
  5

• Problem with --onlyAnn ?

  #19 opened 3 years ago by pmoulos
  3

• Unknown error

  #18 opened 3 years ago by kazumaxneo
  3

• Error executing process > 'normalize_reads', RAM required 150GB

  #13 opened 3 years ago by jcoludar
  6

• Mulled container libbz2.so.1 shared libraries

  #17 opened 3 years ago by rivera10
  1

• no perl in cointainer

  #15 opened 3 years ago by rsuchecki
  5

• Error related to BUSCO

  #9 opened 3 years ago by gushiro
  2

• User DB option

  #10 opened 3 years ago by rivera10
  1

• Combine processes that are shared between various analysis mode

  #11 opened 3 years ago by rivera10
  1

• precheck issues

  #14 opened 3 years ago by rsuchecki
  3

• Pfam-A.hmm.h3i -- not downloaded

  #8 opened 3 years ago by infinity01
  5

• Issue finding busco when running Transpi with slurm / sbatch

  #12 opened 4 years ago by infinity01
  24

• Getting done without running processes

  #7 opened 4 years ago by vhfsantos
  5