PaulaSampaio

PaulaSampaio's Stars

• RoccoDAnt/napari-superres

  Super-resolution napari plugins collection

  Language:HTML42

• cxm12/UNiFMIR

  Pretraining a foundation model for generalizable fluorescence microscopy-based image restoration

  Language:Python361

• BIOP/BIOP-desktop

  Language:JavaScript9

• ImSwitch/ImSwitch

  ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

  Language:Python6952

• dbsb-juntendo/descSPIM

  User-affordable and versatile light-sheet microscopy system for cleared specimens

  Language:Jupyter Notebook11

• TadPath/PUMA

  3D Printed Microscope

  Language:C61247

• lens-biophotonics/SPIMlab

  SPIMlab is a data acquisition and control software for Light Sheet Microscopy

  Language:C++23

• lens-biophotonics/ZetaStitcher

  ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

  Language:Python386

• multiview-stitcher/napari-stitcher

  A napari plugin for stitching of large datasets

  Language:Python113

• ucsdmanorlab/PSSR2

  Point-Scanning Super-Resolution 2

  Language:Python6

• elgw/deconwolf

  Deconvolution of widefield microscopy images and generation of point spread functions

  Language:C381

• DanuserLab/u-segment3D

  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with outputs of any 2D segmentation method.

  Language:MATLAB82

• royerlab/napari-chatgpt

  A napari plugin to process and analyse images with chatGPT!

  Language:CSS23325

• esoubies/FlexSIM

  A flexible SIM reconstruction method capable to handle difficult data prone to reconstruction artifacts.

  Language:MATLAB5

• CellMigrationLab/CellTracksColab

  A platform for compiling, analyzing, and exploring tracking data

  Language:Jupyter Notebook373

• weigertlab/napari-trackastra

  napari plugin for trackastra

  Language:Python111

• HenriquesLab/DL4MicEverywhere

  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images

  Language:Jupyter Notebook6810

• ScaDS/BIDS-lecture-2024

  Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop between April and July 2024

  Language:Jupyter Notebook3819

• ries-lab/3DSMLM

  Protocol for setting up an automated 3D and multi-colour single-molecule microscope

  3

• RoccoDAnt/Basic-digital-imaging_protocols

  Basic digital image design, processing, analysis, management, and presentation - datasets and code

  Language:Jupyter Notebook2

• mesoSPIM/benchtop-hardware

  Hardware documentation for mesoSPIM-Bechtop microscope project

  Language:HTML134

• samhitech/microEye

  A python toolkit for fluorescence microscopy.

  Language:Python177

• mgiacomelli/VirtualHE

  Virtual Transillumination Microscopy code

  Language:C++53

• pachterlab/BI-BE-CS-183-2023

  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

  Language:Jupyter Notebook39362

• weigertlab/spotiflow

  Accurate and efficient spot detection for microscopy data

  Language:Python506

• bioimage-io/JDLL

  The Java library to run Deep Learning models

  Language:Java276

• QI2lab/napari-mcsim

  Napari plugin automating structured illumination microscopy (SIM) reconstruction and diagnostics from the mcSIM package

  Language:Python1

• T-Vale/Ekrano

  Arduino based sensor acquisition

  Language:C++1

• HenriquesLab/NanoJ-eSRRF

  Language:Java192

• ShuJiaLab/MIRO

  Multiscale Image Restoration for fluorescence microscopy

  Language:MATLAB93