PaulaSampaio's Stars
RoccoDAnt/napari-superres
Super-resolution napari plugins collection
cxm12/UNiFMIR
Pretraining a foundation model for generalizable fluorescence microscopy-based image restoration
BIOP/BIOP-desktop
ImSwitch/ImSwitch
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
dbsb-juntendo/descSPIM
User-affordable and versatile light-sheet microscopy system for cleared specimens
TadPath/PUMA
3D Printed Microscope
lens-biophotonics/SPIMlab
SPIMlab is a data acquisition and control software for Light Sheet Microscopy
lens-biophotonics/ZetaStitcher
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
multiview-stitcher/napari-stitcher
A napari plugin for stitching of large datasets
ucsdmanorlab/PSSR2
Point-Scanning Super-Resolution 2
elgw/deconwolf
Deconvolution of widefield microscopy images and generation of point spread functions
DanuserLab/u-segment3D
Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with outputs of any 2D segmentation method.
royerlab/napari-chatgpt
A napari plugin to process and analyse images with chatGPT!
esoubies/FlexSIM
A flexible SIM reconstruction method capable to handle difficult data prone to reconstruction artifacts.
CellMigrationLab/CellTracksColab
A platform for compiling, analyzing, and exploring tracking data
weigertlab/napari-trackastra
napari plugin for trackastra
HenriquesLab/DL4MicEverywhere
Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
ScaDS/BIDS-lecture-2024
Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop between April and July 2024
ries-lab/3DSMLM
Protocol for setting up an automated 3D and multi-colour single-molecule microscope
RoccoDAnt/Basic-digital-imaging_protocols
Basic digital image design, processing, analysis, management, and presentation - datasets and code
mesoSPIM/benchtop-hardware
Hardware documentation for mesoSPIM-Bechtop microscope project
samhitech/microEye
A python toolkit for fluorescence microscopy.
mgiacomelli/VirtualHE
Virtual Transillumination Microscopy code
pachterlab/BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
weigertlab/spotiflow
Accurate and efficient spot detection for microscopy data
bioimage-io/JDLL
The Java library to run Deep Learning models
QI2lab/napari-mcsim
Napari plugin automating structured illumination microscopy (SIM) reconstruction and diagnostics from the mcSIM package
T-Vale/Ekrano
Arduino based sensor acquisition
HenriquesLab/NanoJ-eSRRF
ShuJiaLab/MIRO
Multiscale Image Restoration for fluorescence microscopy