/NA12878

Data and analysis for NA12878 genome on nanopore

OtherNOASSERTION

Oxford Nanopore Human Reference Datasets

Quick Links

Data availability

Notes on downloading files.

Files are generously hosted by Amazon Web Services. Although available as straight-forward HTTP links, download performance is improved by using the Amazon Web Services command-line interface. References should be amended to use the s3:// addressing scheme, i.e. replace http://s3.amazon.com/nanopore-human-wgs/ with s3://nanopore-human-wgs to download. For example, to download rel3-nanopore-wgs-288418386-FAB39088 to the current working directory use the following command.

aws s3 cp s3://nanopore-human-wgs/rel3-nanopore-wgs-288418386-FAB39088.fastq.gz .

Amending the max_concurrent_requests etc. settings as per this guide will improve download performance further.

Contact

Please raise issues on this Github repository concerning this dataset.

History

* rel1: 1st December 2016. Initial release.
* rel2: 5th December 2016. 25 flowcells, 58958035887 bases, 9053909 reads
* rel3: 39 flowcells, 91240120433 bases, 14183584 reads
* rel4: added additional 14 flowcells, 23140190547 bases, 1415868 reads
* RNA release: 30th November 2016. 30 flowcells (direct RNA), 12 flowcells (1D cDNA)