Pinned Repositories
AssmPipe
Pipeline for genome assembly
gapless
Pipeline for assemblies merging
MERD
Meiotic Recombination Detection Pipeline with PacBio HiFi sequencing reads
MSHunter
Microsatellite genotyping
MSIHunter
A microsatellite instability analysis tools using NGS data
NGSGermlineMutPipe
Germline mutation pipeline
Postassm
Post analysis of assembly
TGSGermlineMutPipe
Germline mutations detection pipeline with long reads
msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
msisensor-rna
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
PengJia6's Repositories
PengJia6/gapless
Pipeline for assemblies merging
PengJia6/MERD
Meiotic Recombination Detection Pipeline with PacBio HiFi sequencing reads
PengJia6/MSHunter
Microsatellite genotyping
PengJia6/NGSGermlineMutPipe
Germline mutation pipeline
PengJia6/Postassm
Post analysis of assembly
PengJia6/TGSGermlineMutPipe
Germline mutations detection pipeline with long reads
PengJia6/AssmPipe
Pipeline for genome assembly
PengJia6/BioPipe
PengJia6/pengjia.github.io
Github pages
PengJia6/pindel_complex
capture complex events based on pindel
PengJia6/bak_SpotSV
PengJia6/bioconda-recipes
Conda recipes for the bioconda channel.
PengJia6/ChinseQuartetGenome
PengJia6/cluster
Instructions of HPC at Ye-lab
PengJia6/Complete-Striped-Smith-Waterman-Library
PengJia6/edlib
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
PengJia6/font
PengJia6/GitHub-Chinese-Top-Charts
:cn: GitHub中文排行榜，帮助你发现高分优秀中文项目、更高效地吸收国人的优秀经验成果；榜单每周更新一次，敬请关注！
PengJia6/HapTR
PengJia6/HPP_Year1_Assemblies
Assemblies from HPP Year 1 production
PengJia6/igv-reports
Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
PengJia6/msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
PengJia6/msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
PengJia6/msisensor-rna
MSIRNA: Microsatellite instability detection using RNA sequencing data
PengJia6/pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
PengJia6/playground
Small tools to improve efficiency.
PengJia6/pyCircos
python Circos
PengJia6/STRling
Detect novel (and reference) STR expansions from short-read data
PengJia6/swalign
Smith-Waterman local aligner
PengJia6/truvari
Structural variant toolkit for VCFs