Pinned Repositories
AssmPipe
Pipeline for genome assembly
gapless
Pipeline for assemblies merging
MERD
Meiotic Recombination Detection Pipeline with PacBio HiFi sequencing reads
MSHunter
Microsatellite genotyping
MSIHunter
A microsatellite instability analysis tools using NGS data
NGSGermlineMutPipe
Germline mutation pipeline
Postassm
Post analysis of assembly
TGSGermlineMutPipe
Germline mutations detection pipeline with long reads
msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
msisensor-rna
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
PengJia6's Repositories
PengJia6/MSIHunter
A microsatellite instability analysis tools using NGS data
PengJia6/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
PengJia6/bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
PengJia6/DISCVRSeq
A collection of command line tools for working with sequencing data
PengJia6/DNA-seq-analysis
DNA sequencing analysis notes from Ming Tang
PengJia6/eKLIPse
a tool for predicting mitochondrial DNA deletions using soft-clipping
PengJia6/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
PengJia6/giab_data_indexes
This repository contains data indexes from NIST's Genome in a Bottle project.
PengJia6/MANTIS
Microsatellite Analysis for Normal-Tumor InStability
PengJia6/minineedle
Needleman-Wunsch and Smith-Waterman algorithms in python
PengJia6/mosaic
MicrOSAtellite Instability Classifier
PengJia6/MSIdata
PengJia6/NA12878
Data and analysis for NA12878 genome on nanopore
PengJia6/NGS_pipeline
PengJia6/NGSPipe
This Snakemake pipeline implements the GATK best-practices workflow
PengJia6/pairwise-alignment-in-python
Pairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)
PengJia6/peng-repo
Test github at ISMB2019
PengJia6/R_bilibili
PengJia6/reproducible-computational-workflows
A Practical Introduction to Reproducible Computational Workflows (ISMB/ECCB 2019 Tutorial AM4)
PengJia6/SESC
Toolbox for Next generation sequencing data processing
PengJia6/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
PengJia6/SURVIVOR
Toolset for SV simulation, comparison and filtering
PengJia6/TBtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
PengJia6/testpeng
PengJia6/TGSSV
Analysis of GSCG project
PengJia6/xjtuthesis
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