Lifespan Informatics and Neuroimaging Center
The Lifespan Informatics and Neuroimaging Center at the University of Pennylvannia
Pinned Repositories
aslprep
Preprocessing of arterial spin labeling (ASL) data
babs
BIDS App Bootstrap (BABS)
CuBIDS
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
DevProps
developmental cortical propagation detection + analyses
qsiprep
Preprocessing of diffusion MRI
qsirecon
Reconstruction of preprocessed q-space images (dMRI)
S-A_ArchetypalAxis
spatiotemp_dev_plasticity
xcp_d
Post-processing of fMRIPrep, NiBabies, and HCP outputs
xcpEngine
Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
Lifespan Informatics and Neuroimaging Center's Repositories
PennLINC/qsiprep
Preprocessing of diffusion MRI
PennLINC/xcp_d
Post-processing of fMRIPrep, NiBabies, and HCP outputs
PennLINC/aslprep
Preprocessing of arterial spin labeling (ASL) data
PennLINC/CuBIDS
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
PennLINC/AtlasPack
Combined cortical/subcortical atlases for xcp-d and qsiprep
PennLINC/fw-heudiconv
Heuristic-based Data Curation on Flywheel
PennLINC/Vogel_PLS_Tx-Space
Data and code for Vogel et al., Transcriptomic Gradients paper
PennLINC/network_replication
PennLINC/TheWay
Boilerplate scripts for running workflows on Penn clusters
PennLINC/labSlides
PennLINC/PennLINC.github.io
Documentation for PennLINC
PennLINC/qsirecon
Reconstruction of preprocessed q-space images (dMRI)
PennLINC/qsiprep_build
Builds the dependencies for qsiprep
PennLINC/xcpd_build
Builds a base docker image for xcp-d
PennLINC/executivefunction
This repo includes documentation for the Executive Function project.
PennLINC/thalamocortical_development
https://pennlinc.github.io/thalamocortical_development/
PennLINC/aslprep_build
Builds a base docker image for xcp-d
PennLINC/bids-specification
Brain Imaging Data Structure (BIDS) Specification
PennLINC/ingress2qsirecon
A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in QSIRecon.
PennLINC/macedo_tracometry
PennLINC/mebold-curation
Code to prepare complex-valued multi-echo fMRI data acquired with the CMRR sequence for analysis.
PennLINC/MRtrix3Tissue
MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
PennLINC/msanxiety
PennLINC/open-neuroendocrine-data
Open datasets with anatomical and functional MRI, as well as hormone measures.
PennLINC/paper-template
A template repository for scientific projects.
PennLINC/qsibuild_dependencies
PennLINC/qsirecon-bad
PennLINC/qsirecon_build
Docker build for QSIRecon
PennLINC/smripost-linc
Aggregate interesting derivatives from sMRIPrep/Freesurfer derivatives
PennLINC/xcp_paper