PennLINC/qsiprep

Issues

• Method section in html report is not reporting intramodal template

  #822 opened a month ago by mayayab
  0

• Look into more recent synths

  #821 opened a month ago by mattcieslak
  0

• Upsampling is introducing artifact

  #819 opened 2 months ago by mattcieslak
  0

• Preprocessing multi-session anat data

  #815 opened 2 months ago by jhauneuro
  4

• top of brain cut after preprocessing using version 0.22.0

  #798 opened 3 months ago by jhauneuro
  5

• write out a json sidecar for the merged, preprocessed dwi file

  #818 opened 2 months ago by mattcieslak
  0

• [CI] Check into circleci performance

  #813 opened 2 months ago by mattcieslak
  1

• Use nireports for report generation

  #805 opened 2 months ago by tsalo
  0

• Drop internal copies of templates in favor of re-orienting TemplateFlow templates

  #803 opened 2 months ago by tsalo
  0

• EDDY_CUDA Failure: GPU can only use 1 CPU thread

  #790 opened 2 months ago by amirhusseinab
  4

• Replace hyperlinks with BibTeX references

  #812 opened 2 months ago by tsalo
  0

• Track immediate `Sources` when possible

  #811 opened 2 months ago by tsalo
  0

• Use file lock to avoid concurrent edits to dataset_description.json

  #810 opened 2 months ago by tsalo
  0

• dsi_studio_autotrack not running

  #804 opened 3 months ago by aazor
  6

• Bad preprocessing results for dwi with PSR+ image orientation

  #800 opened 3 months ago by jhauneuro
  0

• qsiprep pennbbl/qsiprep:0.21.4 is linked to the development version v0.21.5.dev0+g36b93fe.d20240504

  #806 opened 2 months ago by johnaeanderson
  2

• error encountered at eddy step when no T1w data are available

  #792 opened 3 months ago by jhauneuro
  4

• dsistudio autotrack recon not saving out all bundles

  #749 opened 3 months ago by hamsiradhakrishnan
  6

• Module merge_dwis has no output called out_dwi_phase

  #775 opened 3 months ago by GHarmata
  0

• 2 phases SDC outputs partial fieldmap

  #799 opened 3 months ago by jhauneuro
  0

• error when using option --distortion-group-merge

  #797 opened 3 months ago by jhauneuro
  0

• TOPUP distortion correction field is flipped for my LPS oriented dwi data

  #793 opened 3 months ago by jhauneuro
  3

• Add logging message when qc metrics on raw data are low

  #796 opened 3 months ago by mattcieslak
  0

• [BUG] List of bundles not fixed in hbcd recon workflow

  #794 opened 3 months ago by mattcieslak
  0

• FUGUE error (no attribute 'FUGUEvsm2ANTSwarp')

  #789 opened 3 months ago by jhauneuro
  3

• [ENH] Compress tck files from Autotrack workflow

  #785 opened 3 months ago by mattcieslak
  0

• synthseg error when using GPU

  #751 opened 3 months ago by jhauneuro
  10

• Eddy error when using GPU

  #747 opened 3 months ago by araikes
  2

• [ENH] Compress nifti files written by the tortoise workflows

  #786 opened 3 months ago by mattcieslak
  0

• Error in connecting qsirecon nodes (0.20.1dev)

  #718 opened 3 months ago by smeisler
  24

• Remove `ReadSidecarJSON` and `get_metadata_for_nifti`

  #759 opened 4 months ago by tsalo
  0

• Two desc-<value> pairs in qsirecon output

  #716 opened 4 months ago by chiuhoward
  8

• Error when using FUGUE for fieldmap (after removing niworkflows)

  #752 opened 4 months ago by kjamison
  3

• SIFT2 mu

  #772 opened 4 months ago by araikes
  1

• SIFT2 parameters

  #765 opened 4 months ago by araikes
  1

• [ENH] QSIPrep and SDCFlows

  #779 opened 4 months ago by mattcieslak
  0

• Error when using mif_to_fib in recon workflow

  #770 opened 4 months ago by ameliecr
  1

• mrtrix_multishell_msmt_ACT-hsvs crashing

  #777 opened 4 months ago by DVSneuro
  2

• Request for option to include ses-<label> entity in all files when a session is present

  #757 opened 5 months ago by psadil
  8

• Parts of documentation not rendering for latest

  #755 opened 5 months ago by cookpa
  0

• preprocessed T1w data as input to QSIPrep

  #754 opened 5 months ago by PandaFaye
  0

• qsirecon workflow connection error: Trying to connect anat_ingress_wf.register_fs_to_qsiprep_wf:outputnode.brain to anat_ingress_wf.outputnode:brain but input 'brain' of node 'anat_ingress_wf.outputnode' is already connected

  #753 opened 5 months ago by PandaFaye
  1

• b0 harmonization error if there is only one b0 image in a series

  #750 opened 6 months ago by bermanj100
  1

• [BUG] coregistration issues

  #740 opened 6 months ago by mattcieslak
  5

• Allow `topup` to use multiple threads

  #715 opened 6 months ago by psadil
  3

• bug in mrtrix_multishell_msmt_ACT-hsvs recon? TypeError: expected str, bytes or os.PathLike object, not NoneType

  #731 opened 6 months ago by DVSneuro
  3

• [ENH] add --prefer-gpu

  #725 opened 6 months ago by mattcieslak
  2

• omp_nthreads not passed to merge_and_denoise_wf on one branch

  #720 opened 7 months ago by psadil
  1

• QSIPrep should fail when missing critical files

  #723 opened 7 months ago by araikes
  3

• Referencing a non-existing variable when using QSIRecon with mrtrix_multishell_msmt_ACT-hsvs specs.

  #717 opened 7 months ago by GalKepler
  1