/DepMap_ClusteRs

Generate clusters of genes using depmap co-essentiality data

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DepMap_ClusteRs

Example notebook for generating clusters from anchor screen hits.

Running Example

First clone this repository.

git clone https://github.com/PeterDeWeirdt/DepMap_ClusteRs.git

Download RStudio if you don't have it already. The free version works fine. Download the most recent DepMap gene effect scores into the data folder. Click on the DepMap_CulsteRs.Rproj file to open the project in RStudio and then run the depmap_clusters_example.Rmd file to run the example. Note that some packages might have to be downloaded in order to run the script.

Questions? Email: pdeweird@broadinstitute.org