PeterDeWeirdt
Computational and Systems Biology PhD student @MITCSBPhD, former computational associate in the Genetic Perturbation Platform @BroadInstitute
MITCambridge, MA
Pinned Repositories
anchoR_Residuals
Minimum Example For Calculating Residuals From Anchor Screen Data
anchoR_scReens_scRipts
Scripts Used for Anchor Screen Manuscript
cas12a_manuscript
Notebooks for the manuscript Optimization of AsCas12a for combinatorial genetic screens in human cells.
coronavirus_screen_analysis
datavis_workshop
Broad CodeRATS' data visualization workshop
DepMap_ClusteRs
Generate clusters of genes using depmap co-essentiality data
FASTS
GPPlotting
Plotting functions for the Genetic Perturbation Platform's R&D group at the Broad institute.
MTL_JULIA
Multitask Learning for Transcriptional Regulatory Network Inference in Julia
sgrna_modeler
On target modeling for CRISPR guides
PeterDeWeirdt's Repositories
PeterDeWeirdt/cas12a_manuscript
Notebooks for the manuscript Optimization of AsCas12a for combinatorial genetic screens in human cells.
PeterDeWeirdt/coronavirus_screen_analysis
PeterDeWeirdt/datavis_workshop
Broad CodeRATS' data visualization workshop
PeterDeWeirdt/GPPlotting
Plotting functions for the Genetic Perturbation Platform's R&D group at the Broad institute.
PeterDeWeirdt/DepMap_ClusteRs
Generate clusters of genes using depmap co-essentiality data
PeterDeWeirdt/FASTS
PeterDeWeirdt/gpp-guide-design
CRISPR sgRNA design for the Genetic Perturbation Platform at the Broad Institute
PeterDeWeirdt/MTL_JULIA
Multitask Learning for Transcriptional Regulatory Network Inference in Julia
PeterDeWeirdt/sgrna_modeler
On target modeling for CRISPR guides
PeterDeWeirdt/anchoR_Residuals
Minimum Example For Calculating Residuals From Anchor Screen Data
PeterDeWeirdt/anchoR_scReens_scRipts
Scripts Used for Anchor Screen Manuscript
PeterDeWeirdt/anchor_screen_nets
PeterDeWeirdt/anchor_screen_parp_lfcs
PeterDeWeirdt/Big_Papi_Paralogs
Analyze synthetic relationships between paralog genes in a Big Papi screen
PeterDeWeirdt/bigpapi
notebooks for analyzing data from Najm, Fadi J., et al. "Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens." Nature biotechnology 36.2 (2018): 179.
PeterDeWeirdt/cell_embedding
Visualize maps of cancer cell lines
PeterDeWeirdt/combibuild
Build combinatorial libraries for CRISPR screening
PeterDeWeirdt/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
PeterDeWeirdt/dash-extensions
PeterDeWeirdt/deck_of_cards
A minimal nbdev example
PeterDeWeirdt/deployment-heroku
Deployment Heroku
PeterDeWeirdt/DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
PeterDeWeirdt/en_pam_gb
PeterDeWeirdt/examples
A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.
PeterDeWeirdt/fastbook
Draft of the fastai book
PeterDeWeirdt/flask-ml-app
Example project
PeterDeWeirdt/ggpointdensity
:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.
PeterDeWeirdt/intactr
Calculate interaction scores from combinatorial screening data
PeterDeWeirdt/OpticalPooledScreens
PeterDeWeirdt/python-docs-hello-world
A simple python application for docs