Phelimb/atlas

Issues

• Atlas installation

  #33 opened 5 years ago
  0

• Issue with database or genotype calibration

  #23 opened 8 years ago
  9

• Walk finds allele at 600x that genotype misses

  #22 opened 8 years ago
  1

• Change threshold for outputting paths in `walk`

  #21 opened 8 years ago
  3

• Underestimation of expected depth

  #20 opened 8 years ago
  0

• .

  #19 opened 8 years ago
  0

• Add MCR-1/2 to panel

  #18 opened 8 years ago
  1

• atlas/docs/usage/genotyping.md

  #17 opened 8 years ago
  3

• Mccortex Path not accepted

  #16 opened 8 years ago
  5

• Install issue

  #15 opened 8 years ago
  2

• Walk finds completely novel allele when presented with mutated allele

  #14 opened 8 years ago
  3

• Walk finds database allele when presented with mutated allele

  #13 opened 8 years ago
  3

• If there's no overlapping variants than `place` defaults to callset with smallest number of vars

  #12 opened 8 years ago
  0

• Genotyping Errors

  #11 opened 8 years ago
  32

• Issues from Rachel

  #10 opened 8 years ago
  2

• Add option for ONT error rate for genotyping

  #9 opened 8 years ago
  0

• Build a sketch of every sample in your data - use this to find nearest neighbours

  #8 opened 8 years ago
  0

• Defining variants independent of reference

  #7 opened 8 years ago
  1

• can we remove the copyright attribution to isaac in atlas ?

  #6 opened 8 years ago
  1

• Removing paralog kmers

  #5 opened 8 years ago
  1

• How to get good measure of sensitivity and specificity

  #4 opened 9 years ago
  0

• references should be attached to population variants

  #3 opened 8 years ago
  0

• Clade defining variants should be variants found in ALL

  #2 opened 9 years ago
  0

• Use Genotyped variants not called variants to build placer tree

  #1 opened 9 years ago
  0