/varsim

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

Primary LanguageJavaBSD 2-Clause "Simplified" LicenseBSD-2-Clause

VarSim

This has been forked from: https://github.com/bioinform/varsim

Here I am keeping a version for use within GeneBreaker.

Modifications

  • Build script modified to move samtools and htslib into conda

Deployment

Requirements

  • git
  • gcc ≥ 5.4.0

To deploy:

git clone https://github.com/Phillip-a-richmond/varsim
cd varsim
./build.sh

Common issues

  • Make sure you don't have an active Conda environment

Other VarSim related things found below

See http://bioinform.github.io/varsim/ for help, downloads and webapps.