Phillip-a-richmond

AnnotateVariants

This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions for software installs.

Bioinformatics-Introductory-Analysis-Course

This repository contains course material for Phillip Richmond's Introduction to Bioinformatics Analysis Course

GenomeAnalysisModule

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

PrecisionHealthVirtualEnvironment

This is a virtual environment which contains databases, software, workflows, and workshops for Precision Health Data Analysis.

SV_Calling_And_Annotation

This repo details the SV annotation for Illumina WGS data.

Phillip-a-richmond/GenomeAnalysisModule

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Phillip-a-richmond/PrecisionHealthVirtualEnvironment

This is a virtual environment which contains databases, software, workflows, and workshops for Precision Health Data Analysis.

Phillip-a-richmond/AnnotateVariants

This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions for software installs.

Phillip-a-richmond/Bioinformatics-Introductory-Analysis-Course

This repository contains course material for Phillip Richmond's Introduction to Bioinformatics Analysis Course

Phillip-a-richmond/SV_Calling_And_Annotation

This repo details the SV annotation for Illumina WGS data.

Phillip-a-richmond/ALD_Modifier_Project

This repository houses scripts for analysis and plotting of the ALD Modifier Project headed by Clara van Karnebeek

Phillip-a-richmond/Annotate_CNVs

This is a repo that contains recipes for CNV annotation

Phillip-a-richmond/AnnotSV

Annotation and Ranking of Structural Variation

Phillip-a-richmond/arcsv

Complex structural variant detection from WGS data

Phillip-a-richmond/arcsv-docker

A docker container for the arc-sv tool

Phillip-a-richmond/ArrayFromWGS

This repository contains code and instructions for setting up the ArrayFromWGS analysis, which extracts read-depth and genotype information from curated genomic probe sets.

Phillip-a-richmond/BuildControlCohort

This repo is for building a control cohort for WGS and RNAseq.

Phillip-a-richmond/BuildInHouseDB

This set of scripts will build an in-house database once you deposit VCF files into a directory.

Phillip-a-richmond/choosealicense.com

A site to provide non-judgmental guidance on choosing a license for your open source project

Phillip-a-richmond/ComputeCanada_EOT

This is a repository for the Education, Outreach and Training tutorials offered by Compute Canada

Phillip-a-richmond/ExpansionHunterDenovo

A suite of tools for detecting expansions of short tandem repeats

Phillip-a-richmond/FlexTyper-Manuscript-Analysis

This is the repository for the analysis of data in the FlexTyper project

Phillip-a-richmond/FlexTyper_manuscript

A repository for the code and analysis for the FlexTyper paper

Phillip-a-richmond/HaplotypingUtils

Some scripts and utilities for haplotyping analysis collaboration with Hayden lab.

Phillip-a-richmond/old-website.io

This is the website for Phillip A Richmond. I guess to keep some of my stuff in one spot?

Phillip-a-richmond/phillip-a-richmond.github.io

personal website

Phillip-a-richmond/reproducible_analysis_demo

Phillip-a-richmond/RGDModule

An interactive website utilizing synthetic rare genetic disease scenarios to teach about the process of variant/gene prioritization in rare disease diagnosis.

Phillip-a-richmond/scRNAseq-docker

This is a docker container for use in scRNAseq analysis.

Phillip-a-richmond/stix-docker

Dockerfile for Ryan Layer's stix sv annotator + associated tools

Phillip-a-richmond/varsim

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

Phillip-a-richmond/vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files

Phillip-a-richmond/WassermanLabWebsite

Allan Lab website

Phillip-a-richmond/website-retired-2022

Personal website

Phillip-a-richmond/Yeast-Ty1-TIPseq-Analysis

This is the repository for code pertaining to the analysis of yeast Ty1 sequencing data.