USDA-ARS 5loci BLAST Databases for GEAbash

Cloning 5loci dbs

git clone https://github.com/Phylloxera/5loci.git

Updating 5loci dbs

cd 5loci; git pull https://github.com/Phylloxera/5loci.git

Example conducting a BLAST search against one of the 5loci dbs

export BLASTDB=$BLASTDB:5loci/Colibactin_clb; blastn -task megablast -query <query fasta> -db Colibactin_clb \ -out <output file name> -num_threads <number of threads>