Pinned Repositories
AncestralSequenceReconstruction.jl
AoC_2023
ArDCA.jl
Autoregressive networks for protein
ARGTools
BackwardCoalescent.jl
Simulate genealogies with a backward coalescent approach. Based on TreeTools.jl
BioSequenceMappings.jl
Tools for mapping biological sequences to numerical vectors, and to manipulate alignments
DCATools
FluPredictibility
TreeKnit.jl
TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).
TreeTools.jl
Tools for handling rooted phylogenetic or genealogic trees with Julia.
PierreBarrat's Repositories
PierreBarrat/TreeKnit.jl
TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).
PierreBarrat/TreeTools.jl
Tools for handling rooted phylogenetic or genealogic trees with Julia.
PierreBarrat/DCATools
PierreBarrat/BioSequenceMappings.jl
Tools for mapping biological sequences to numerical vectors, and to manipulate alignments
PierreBarrat/FluPredictibility
PierreBarrat/AncestralSequenceReconstruction.jl
PierreBarrat/AoC_2023
PierreBarrat/ArDCA.jl
Autoregressive networks for protein
PierreBarrat/ARGTools
PierreBarrat/BackwardCoalescent.jl
Simulate genealogies with a backward coalescent approach. Based on TreeTools.jl
PierreBarrat/BioTools
Tools for handling biological sequences, (flu) strains, statistics on those, etc...
PierreBarrat/DataFrames.jl
In-memory tabular data in Julia
PierreBarrat/DCATools2.jl
PierreBarrat/DiscreteRandomWalk1D.jl
PierreBarrat/ExpiringFitnessFigures
PierreBarrat/ExpiringFitnessNotebooks
PierreBarrat/FrequencyTrajectories.jl
Frequency trajectories for population dynamics
PierreBarrat/MTKTools
This package contains methods for testing the accuracy of the MultiTreeKnit module of TreeKnit.jl
PierreBarrat/OldTreeKnit
PierreBarrat/pangraph
A bioinformatic toolkit to align genome assemblies into pangenome graphs
PierreBarrat/PartialSweepNotebooks.jl
PierreBarrat/PartialSweepSIR.jl
Multi-strains SIR model that generates partial selective sweeps
PierreBarrat/PierreBarrat.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
PierreBarrat/Pluto.jl
🎈 Simple reactive notebooks for Julia
PierreBarrat/SegmentedReassortmentGraph.jl
PierreBarrat/SIR_partial_sweep.jl_OLD
PierreBarrat/TestPhyloformer
PierreBarrat/TestRecombTools
PierreBarrat/TreeAlgs
PierreBarrat/WrightFisher.jl
Simulation of genomes in constant a size population with selection and mutations