PingWang7

PingWang7's Stars

• grunwaldlab/metacoder

  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

  Language:R13528

• grst/rstudio-server-conda

  Run Rstudio Server in a conda environment

  Language:Shell23047

• david-barnett/microViz

  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

  Language:R10111

• bioforensics/pytaxonkit

  Python bindings for the TaxonKit library

  Language:Python312

• 10XGenomics/bamtofastq

  Convert 10x BAM files to the original FASTQs compatible with 10x pipelines

  Language:Rust596

• arpcard/rgi

  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

  Language:Python32676

• samnooij/PathoFact

  Altered version of PathoFact to work more conveniently with SLURM and large input files

  Language:Python101

• ohmeta/metapi

  A general metagenomics data mining system focus on robust microbiome research

  Language:Python5517

• indraniel/sff2fastq

  extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output

  Language:C3617

• sunduanchen/Scissor

  Scissor package

  Language:C++17931

• Adrian-Cantu/PRINSEQ-plus-plus

  parallel c prinseq

  Language:C++184

• YosefLab/Compass

  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

  Language:Python9325

• zhengrongbin/MEBOCOST

  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data

  Language:Jupyter Notebook6310

• taowenmicro/EasyMicrobiomeR

  Using R language in microbiome analysis

  Language:HTML27080

• changwn/scFEA

  single cell Flux Estimation Analysis (scFEA) Try the below web server!

  Language:Jupyter Notebook9432

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python938175

• jingwanglab/Populus_genomic_prediction_climate_vulnerability

  Language:R3315

• sinanugur/cellsnake

  Cellsnake tool main repo

  Language:Python338

• rayylee/mwget

  Language:Shell3010

• YuLab-SMU/MicrobiomeProfiler

  :microbe: A shiny package for microbiome functional enrichment analysis

  Language:R367

• YuLab-SMU/clusterProfiler

  :bar_chart: A universal enrichment tool for interpreting omics data

  Language:R1k253

• tonylu110/uyou-todo-electron

  This is a todo list with electron

  Language:Vue27215

• rhysnewell/rosella

  Metagenomic Binning Algorithm

  Language:Rust383

• PierreBSC/Viral-Track

  Language:R5627

• cozygene/FEAST

  Fast expectation maximization for microbial source tracking

  Language:R11560

• conda-forge/miniforge

  A conda-forge distribution.

  Language:Shell6.2k323

• ruppinlab/CSI-Microbes-identification

  Code for the identification step for CSI-Microbes

  Language:Python217

• rvalieris/parallel-fastq-dump

  parallel fastq-dump wrapper

  Language:Python27533

• facebookresearch/fairseq

  Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

  Language:Python30.2k6.4k

• tripathiarpan20/midiformers

  Applying Transformers to MIDI music for various tasks

  Language:Python495