Analysis pipeline for the PAH biomarker study by Sonnweber T et al.
A complete R pipeline for search of novel, clinically applicable signatures of pulmonary artherial hypertension mortality risk.
Please cite the repository, and the peer-reviewed publication of the analysis results when available. The raw data files will be made upon request to the study authors, Dr. Thomas Sonnweber and Prof. Judith Löffler-Ragg.
The following development packages are required to run the pipeline:
devtools::install_github('PiotrTymoszuk/soucer') ## script sourcing
devtools::install_github('PiotrTymoszuk/ExDA') ## exploratory data analysis and staristical hypothesis testing
devtools::install_github('PiotrTymoszuk/clustTools') ## factor analysis and unsupervised clustering
devtools::install_github('PiotrTymoszuk/coxExtensions') ## fit statistics and quality control for Cox models
devtools::install_github('PiotrTymoszuk/figur') ## management of figures and tables in Rmd documents
devtools::install_github('PiotrTymoszuk/trafo') ## handling of tabular data
Source 'exec.R' to launch the entire pipeline:
source('exec.R')
The repository maintainer is Piotr Tymoszuk. Data requests should be addressed to Dr. Thomas Sonnweber and Prof. Judith Löffler-Ragg.